Papers - TAMADA Yoshinori
-
Variant analysis of prostate cancer in Japanese patients and a new attempt to predict related biological pathways.
Rika Kasajima, Rui Yamaguchi, Eigo Shimizu, Yoshinori Tamada, Atsushi Niida, George Tremmel, Takeshi Kishida, Ichiro Aoki, Seiya Imoto, Satoru Miyano, Hiroji Uemura, Yohei Miyagi
Oncology reports 43 ( 3 ) 943 - 952 2020.3
-
System-based differential gene network analysis for characterizing a sample-specific subnetwork
Yoshihisa Tanaka, Yoshinori Tamada, Marie Ikeguchi, Fumiyoshi Yamashita, Yasushi Okuno
Biomolecules 10 ( 2 ) 2020.2
-
Memory efficient parallel algorithm for optimal DAG structure search using direct communication
Yoshinori Tamada
Journal of Parallel and Distributed Computing 119 27 - 35 2018
-
Oncogenic roles of TOPK and MELK, and effective growth suppression by small molecular inhibitors in kidney cancer cells
Taigo Kato, Hiroyuki Inoue, Seiya Imoto, Yoshinori Tamada, Takashi Miyamoto, Yo Matsuo, Yusuke Nakamura, Jae-Hyun Park
Oncotarget 7 ( 14 ) 17652 - 64 2016.4
-
The hnRNP-Htt axis regulates necrotic cell death induced by transcriptional repression through impaired RNA splicing
Y. Mao, T. Tamura, Y. Yuki, D. Abe, Y. Tamada, S. Imoto, H. Tanaka, H. Homma, K. Tagawa, S. Miyano, H. Okazawa
CELL DEATH & DISEASE 7 e2207 2016.4
-
Efficient parallel algorithm for optimal DAG structure search on parallel computer with torus network
Honda, H., Tamada, Y., Suda, R.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 10048 LNCS 2016
-
Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs
Asuka Nakata, Ryo Yoshida, Rui Yamaguchi, Mai Yamauchi, Yoshinori Tamada, Andre Fujita, Teppei Shimamura, Seiya Imoto, Tomoyuki Higuchi, Masaharu Nomura, Tatsuo Kimura, Hiroshi Nokihara, Masahiko Higashiyama, Kazuya Kondoh, Hiroshi Nishihara, Arinobu Tojo, Seiji Yano, Satoru Miyano, Noriko Gotoh
Scientific Reports 5 ( 1 ) 13076 2015.8
-
Lung adenocarcinoma subtypes definable by lung development-related miRNA expression profiles in association with clinicopathologic features
Chinatsu Arima, Taisuke Kajino, Yoshinori Tamada, Seiya Imoto, Yukako Shimada, Masahiro Nakatochi, Motoshi Suzuki, Hisanori Isomura, Yasushi Yatabe, Tomoya Yamaguchi, Kiyoshi Yanagisawa, Satoru Miyano, Takashi Takahashi
Carcinogenesis 35 ( 10 ) 2224 - 2231 2014.6
-
Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis
Muna Affara, Debbie Sanders, Hiromitsu Araki, Yoshinori Tamada, Benjamin J Dunmore, Sally Humphreys, Seiya Imoto, Christopher Savoie, Satoru Miyano, Satoru Kuhara, David Jeffries, Cristin Print, D Stephen Charnock-Jones
BMC Genomics 14 ( 1 ) 23 - 23 2013
-
Cell Cycle Gene Networks Are Associated with Melanoma Prognosis
Li Wang, Daniel G. Hurley, Wendy Watkins, Hiromitsu Araki, Yoshinori Tamada, Anita Muthukaruppan, Louis Ranjard, Eliane Derkac, Seiya Imoto, Satoru Miyano, Edmund J. Crampin, Cristin G. Print, Ying Xu
PLoS ONE 7 ( 4 ) e34247 2012.4
-
Computational gene network analysis reveals TNF-induced angiogenesis
Kentaro Ogami, Rui Yamaguchi, Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Cristin Print, Satoru Miyano
BMC Systems Biology 6 ( Suppl 2 ) S12 2012
-
Gene network inference and visualization tools for biologists: application to new human transcriptome datasets
Daniel Hurley, Hiromitsu Araki, Yoshinori Tamada, Ben Dunmore, Deborah Sanders, Sally Humphreys, Muna Affara, Seiya Imoto, Kaori Yasuda, Yuki Tomiyasu, Kosuke Tashiro, Christopher Savoie, Vicky Cho, Stephen Smith, Satoru Kuhara, Satoru Miyano, D. Stephen Charnock-Jones, Edmund J. Crampin, Cristin G. Print
Nucleic Acids Research 40 ( 6 ) 2377 - 2398 2011.11
-
Estimating Genome-Wide Gene Networks Using Nonparametric Bayesian Network Models on Massively Parallel Computers
Y Tamada, S Imoto, H Araki, M Nagasaki, C Print, D S Charnock-Jones, S Miyano
IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 ( 3 ) 683 - 697 2011.5
-
Parallel algorithm for learning optimal bayesian network structure
Tamada, Y., Imoto, S., Miyano, S.
Journal of Machine Learning Research 12 2011
-
SiGN-SSM: Open source parallel software for estimating gene networks with state space models
Tamada, Y., Yamaguchi, R., Imoto, S., Hirose, O., Yoshida, R., Nagasaki, M., Miyano, S.
Bioinformatics 27 ( 8 ) 1172 - 3 2011
-
Searching optimal Bayesian network structure on constraint search space: Super-structure approach
Imoto, S., Kojima, K., Perrier, E., Tamada, Y., Miyano, S.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 6797 LNAI 2011
-
Collocation-based sparse estimation for constructing dynamic gene networks.
Shimamura T, Imoto S, Nagasaki M, Yamauchi M, Yamaguchi R, Fujita A, Tamada Y, Gotoh N, Miyano S
Genome informatics. International Conference on Genome Informatics 24 164 - 78 2010
-
Analysis of PPARα-dependent and PPARα-independent transcript regulation following fenofibrate treatment of human endothelial cells
Hiromitsu Araki, Yoshinori Tamada, Seiya Imoto, Ben Dunmore, Deborah Sanders, Sally Humphrey, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Kaori Yasuda, Yuki Tomiyasu, Kousuke Tashiro, Cristin Print, D. Stephen Charnock-Jones, Satoru Kuhara, Satoru Miyano
Angiogenesis 12 ( 3 ) 221 - 229 2009.4
-
Gene networks viewed through two models
Miyano, S., Yamaguchi, R., Tamada, Y., Nagasaki, M., Imoto, S.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 5462 LNBI 2009
-
Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks.
Yoshinori Tamada, Hiromitsu Araki, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Yuki Tomiyasu, Kaori Yasuda, Ben Dunmore, Deborah Sanders, Sally Humphreys, Cristin Print, D Stephen Charnock-Jones, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 251 - 63 2009