Papers - FUJII Hodaka
-
Identification of telomere-associated molecules by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP)
Toshitsugu Fujita, Yoshinori Asano, Junko Ohtsuka, Yoko Takada, Kazunobu Saito, Rieko Ohki, Hodaka Fujii
SCIENTIFIC REPORTS 3 3171 2013.11
-
Efficient isolation of specific genomic regions and identification of associated proteins by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR
Toshitsugu Fujita, Hodaka Fujii
Biochemical and Biophysical Research Communications 439 ( 1 ) 132 - 136 2013.9
-
Direct Identification of Insulator Components by Insertional Chromatin Immunoprecipitation
Toshitsugu Fujita, Hodaka Fujii
PLOS ONE 6 ( 10 ) e26109 2011.10
-
Insertional chromatin immunoprecipitation: A method for isolating specific genomic regions
Akemi Hoshino, Hodaka Fujii
JOURNAL OF BIOSCIENCE AND BIOENGINEERING 108 ( 5 ) 446 - 449 2009.11
-
Regulation of cell proliferation by interleukin-3-induced nuclear translocation of pyruvate kinase
Akemi Hoshino, John A. Hirst, Hodaka Fujii
JOURNAL OF BIOLOGICAL CHEMISTRY 282 ( 24 ) 17706 - 17711 2007.6
-
iChIP-SILAC analysis identifies epigenetic regulators of CpG methylation of the p16INK4A gene
Fujita T, Fujii H
FEBS Letters 2024.4
-
Moderate transgenic expression of CBR1 is not sufficient to prolong life expectancy in an SV40 T-antigen-induced gynecological carcinogenesis mouse model
Hirosaki Medical Journal 74 99 - 107 2024.3
-
Real-time MBDi-RPA using methyl-CpG binding protein 2: A real-time detection method for simple and rapid estimation of CpG methylation status
Ishidoya M, Fujita T, Tasaka S, Fujii H
Analytica Chimica Acta 1302 342486 2024.3
-
GARP on hepatic stellate cells is essential for the development of liver fibrosis
Zhang X, Sharma P, Maschmeyer P, Hu Y, Lou M, Kim J, Fujii H, Unutmaz D, Schwabe RF, Winau F
Journal of Hepatology 79 ( 5 ) 1214 - 1225 2023.11
-
Oligoribonucleotide-mediated blockade of DNA extension by Taq DNA polymerases Increases specificity and sensitivity for detecting single-nucleotide differences
Fujita T, Nagata S, Fujii H
Analytical Chemistry 2023.2
-
Development of transgenic mice overexpressing mouse carbonyl reductase 1
Yokoyama M, Fujita T, Kadonosawa Y, Tatara Y, Motooka D, Ikawa M, Fujii H, Yokoayama Y
Molecular Biology Reports 2022.11
-
An enChIP system for the analysis of genome functions in budding yeast
Fujii H, Fujita T
Biology Methods & Protocols 7 ( 1 ) bpac025 2022.10
-
Circular RNAs hsa_circ_0001438 and hsa_circ_0000417 are downregulated and upregulated, respectively, in hepatocellular carcinoma
Imanishi S, Nagata S, Fujita T, Fujii H
International Journal of Experimental Pathology 103 ( 6 ) 245 - 251 2022.9
-
IL-3-induced immediate expression of c-fos and c-jun is modulated by the IKK2-JNK axis
Fujita H, Fujita T, Fujii H
Cells 11 ( 9 ) 1451 2022.4
-
enChIP-Seq analyzer: a software program to analyze and interpret enChIP-Seq data for the detection of physical interactions between genomic regions
Sarudate A, Fujita T, Nakayama T, Fujii H
Genes 13 472 2022.3
-
A stem cell marker KLF5 regulates CCAT1 via three-dimensional genome structure in colorectal cancer cells.
Takashi Takeda, Yuhki Yokoyama, Hidekazu Takahashi, Daisuke Okuzaki, Kaho Asai, Hiroaki Itakura, Norikatsu Miyoshi, Shogo Kobayashi, Mamoru Uemura, Toshitsugu Fujita, Hiroo Ueno, Masaki Mori, Yuichiro Doki, Hodaka Fujii, Hidetoshi Eguchi, Hirofumi Yamamoto
British journal of cancer 126 109 - 119 2021.10
-
Protein or ribonucleoprotein-mediated blocking of recombinase polymerase amplification enables the discrimination of nucleotide and epigenetic differences between cell populations.
Toshitsugu Fujita, Shoko Nagata, Hodaka Fujii
Communications biology 4 ( 1 ) 988 - 988 2021.8
-
Corrigendum to "Cell type-specific roles of Jak3 in IL-2-induced proliferative signal transduction" [Biochem. Biophys. Res. Commun. 354 (3) (2007) 825-829].
Fujii H
Biochemical and Biophysical Research Communications 552 196 2021.5
-
Sequence-specific inhibition of reverse transcription by recombinant CRISPR/dCas13a ribonucleoprotein complexes in vitro
Toshitsugu Fujita, Shoko Nagata, Miyuki Yuno, Hodaka Fujii
Biology Methods and Protocols 6 ( 1 ) bpab009 2021.1
-
MSCV-based retroviral plasmids expressing 3xFLAG-Sp-dCas9 for enChIP analysis.
Miyuki Yuno, Shoko Nagata, Toshitsugu Fujita, Hodaka Fujii
Biology methods & protocols 6 ( 1 ) bpab013 2021
-
pSIR-bsr, a self-inactivating retrovirus vector expressing the blasticidin S-resistance gene.
Fujii H
Biology Methods & Protocols 6 ( 1 ) bpab022 2021
-
SAMHD1-mediated dNTP degradation is required for efficient DNA repair during antibody class switch recombination.
Afzal Husain, Jianliang Xu, Hodaka Fujii, Mikiyo Nakata, Maki Kobayashi, Ji-Yang Wang, Jan Rehwinkel, Tasuku Honjo, Nasim A Begum
EMBO Journal 39 ( 15 ) e102931 - e102931 2020.8
-
Discrimination of CpG Methylation Status and Nucleotide Differences in Tissue Specimen DNA by Oligoribonucleotide Interference-PCR.
Takeshi Shimizu, Toshitsugu Fujita, Sakie Fukushi, Yuri Horino, Hodaka Fujii
International Journal of Molecular Sciences 21 ( 14 ) 2020.7
-
A distal enhancer at risk locus 11q13.5 promotes suppression of colitis by T reg cells
Rabab Nasrallah, Charlotte J Imianowski, Lara Bossini-Castillo, Francis M Grant, Mikail Dogan, Lindsey Placek, Lina Kozhaya, Paula Kuo, Firas Sadiyah, Sarah K Whiteside, Maxwell R Mumbach, Dafni Glinos, Panagiota Vardaka, Carly E Whyte, Teresa Lozano, Toshitsugu Fujita, Hodaka Fujii, Adrian Liston, Simon Andrews, Adeline Cozzani, Jie Yang, Suman Mitra, Enrico Lugli, Howard Y Chang, Derya Unutmaz, Gosia Trynka, Rahul Roychoudhuri
Nature 583 ( 7816 ) 447 - 452 2020.6
-
Simultaneous detection of the T790M and L858R mutations in the EGFR gene by oligoribonucleotide interference-PCR
FUJII Hodaka
International Journal of Molecular Sciences 20 ( 16 ) 4020 2019.8
-
Target enrichment from a DNA mixture by oligoribonucleotide interference-PCR (ORNi-PCR)
FUJII Hodaka
Biology Methods & Protocols 4 ( 1 ) bpz009 2019.8
-
Normal B cell development and Pax5 expression in Thy28/ThyN1-deficient mice
FUJII Hodaka
PLoS One 14 ( 7 ) e0220199 - e0220199 2019.7
-
A refined two-step oligoribonucleotide interference-PCR method for precise discrimination of nucleotide differences
FUJII Hodaka
Scientific Reports 8 ( 1 ) 17195 - 17195 2018.11
-
Detection of genome-edited cells by oligoribonucleotide interference-PCR.
Fujita T, Yuno M, Kitaura F, Fujii H
DNA research : an international journal for rapid publication of reports on genes and genomes 25 ( 4 ) 395 - 407 2018.8
-
An enChIP system for the analysis of bacterial genome functions
Toshitsugu Fujita, Miyuki Yuno, Hodaka Fujii
BMC Research Notes 11 ( 1 ) 387 - 387 2018.6
-
Promoter-associated proteins of EPAS1 identified by enChIP-MS – A putative role of HDX as a negative regulator
Arash Hamidian, Marica Vaapil, Kristoffer von Stedingk, Toshitsugu Fujita, Camilla U. Persson, Pontus Eriksson, Srinivas Veerla, Katleen De Preter, Frank Speleman, Hodaka Fujii, Sven Påhlman, Sofie Mohlin
Biochemical and Biophysical Research Communications 499 ( 2 ) 291 - 298 2018.5
-
EnChIP systems using different CRISPR orthologues and epitope tags
Toshitsugu Fujita, Miyuki Yuno, Hodaka Fujii
BMC Research Notes 11 ( 1 ) 154 - 154 2018.2
-
Transgenic mouse lines expressing the 3xFLAG-dCas9 protein for enChIP analysis
Toshitsugu Fujita, Fusako Kitaura, Asami Oji, Naoki Tanigawa, Miyuki Yuno, Masahito Ikawa, Ichiro Taniuchi, Hodaka Fujii
Genes to Cells 23 ( 4 ) 318 - 325 2018.2
-
Locus-specific ChIP combined with NGS analysis reveals genomic regulatory regions that physically interact with the Pax5 promoter in a chicken B cell line
Toshitsugu Fujita, Fusako Kitaura, Miyuki Yuno, Yutaka Suzuki, Sumio Sugano, Hodaka Fujii
DNA RESEARCH 24 ( 5 ) 537 - 548 2017.10
-
Identification of physical interactions between genomic regions by enChIP-Seq
Toshitsugu Fujita, Miyuki Yuno, Yutaka Suzuki, Sumio Sugano, Hodaka Fujii
GENES TO CELLS 22 ( 6 ) 506 - 520 2017.6
-
The role of platelet and endothelial GARP in thrombosis and hemostasis
Elien Vermeersch, Frederik Denorme, Wim Maes, Simon F. De Meyer, Karen Vanhoorelbeke, Justin Edwards, Ethan M. Shevach, Derya Unutmaz, Hodaka Fujii, Hans Deckmyn, Claudia Tersteeg
PLOS ONE 12 ( 3 ) e0173329 - e0173329 2017.3
-
Allele-specific locus binding and genome editing by CRISPR at the p16INK4a locus
Toshitsugu Fujita, Miyuki Yuno, Hodaka Fujii
SCIENTIFIC REPORTS 6 30485 - 30485 2016.7
-
Efficient sequence-specific isolation of DNA fragments and chromatin by in vitro enChIP technology using recombinant CRISPR ribonucleoproteins
Toshitsugu Fujita, Miyuki Yuno, Hodaka Fujii
GENES TO CELLS 21 ( 4 ) 370 - 377 2016.2
-
Identification of Non-Coding RNAs Associated with Telomeres Using a Combination of enChIP and RNA Sequencing
Toshitsugu Fujita, Miyuki Yuno, Daisuke Okuzaki, Rieko Ohki, Hodaka Fujii
PLOS ONE 10 ( 4 ) e0123387 - e0123387 2015.4
-
A Critical Role of the Thy28-MYH9 Axis in B Cell-Specific Expression of the Pax5 Gene in Chicken B Cells
Toshitsugu Fujita, Fusako Kitaura, Hodaka Fujii
PLOS ONE 10 ( 1 ) e0116579 2015.1
-
Efficient isolation of specific genomic regions retaining molecular interactions by the iChIP system using recombinant exogenous DNA-binding proteins
Toshitsugu Fujita, Hodaka Fujii
BMC MOLECULAR BIOLOGY 15 26 2014.11
-
Oligoribonucleotide (ORN) Interference-PCR (ORNi-PCR): A Simple Method for Suppressing PCR Amplification of Specific DNA Sequences Using ORNs
Naoki Tanigawa, Toshitsugu Fujita, Hodaka Fujii
PLOS ONE 9 ( 11 ) e113345 2014.11
-
Identification of Proteins Associated with an IFN gamma-Responsive Promoter by a Retroviral Expression System for enChIP Using CRISPR
Toshitsugu Fujita, Hodaka Fujii
PLOS ONE 9 ( 7 ) e103084 2014.7
-
Regulation of the expression of GARP/latent TGF-β1 complexes on mouse T cells and their role in regulatory T cell and Th17 differentiation
Justin P. Edwards, Hodaka Fujii, Angela X. Zhou, John Creemers, Derya Unutmaz, Ethan M. Shevach
Journal of Immunology 190 ( 11 ) 5506 - 5515 2013.6
-
GARP-TGF-β complexes negatively regulate regulatory T cell development and maintenance of peripheral CD4+ T cells in vivo
Angela X Zhou , Lina Kozhaya, Hodaka Fujii, Derya Unutmaz
Journal of Immunology 190 ( 10 ) 5057 - 5064 2013.5
-
Discovery and characterization of new transcripts from RNA-seq data in mouse CD4(+) T cells
Andrew Paul Hutchins, Stephane Poulain, Hodaka Fujii, Diego Miranda-Saavedra
GENOMICS 100 ( 5 ) 303 - 313 2012.11
-
Transcription start sites and usage of the first exon of mouse Foxp3 gene
Toshitsugu Fujita, Hodaka Fujii
MOLECULAR BIOLOGY REPORTS 39 ( 10 ) 9613 - 9619 2012.10
-
Apurinic/apyrimidinic endonuclease1/redox factor-1 (Ape1/Ref-1) is essential for IL-21-induced signal transduction through ERK1/2 pathway
Farha M. Juliana, Hidetoshi Nara, Tadashi Onoda, Mizanur Rahman, Akemi Araki, Lianjin Jin, Hodaka Fujii, Nobuyuki Tanaka, Tomoaki Hoshino, Hironobu Asao
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 420 ( 3 ) 628 - 634 2012.4
-
Species-specific 5 '-genomic structure and multiple transcription start sites in the chicken Pax5 gene
Toshitsugu Fujita, Hodaka Fujii
GENE 477 ( 1-2 ) 24 - 31 2011.5
-
Novel reporter cell line to analyze cytokine-mediated expression regulation of c-myc gene
Hodaka Fujii
JOURNAL OF BIOSCIENCE AND BIOENGINEERING 108 ( 5 ) 438 - 440 2009.11
-
Expression of GARP selectively identifies activated human FOXP3+regulatory T cells
Rui Wang, Lina Kozhaya, Frances Mercer, Alka Khaitan, Hodaka Fujii, Derya Unutmaz
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 106 ( 32 ) 13439 - 13444 2009.8
-
Regulation of Fas-mediated immune homeostasis by an activation-induced protein, Cyclon
Shella Saint Fleur, Akemi Hoshino, Kimie Kondo, Takeshi Egawa, Hodaka Fujii
BLOOD 114 ( 7 ) 1355 - 1365 2009.8
-
Lack of nuclear translocation of cytoplasmic domains of IL-2/IL-15 receptor subunits
Hodaka Fujii, Akemi Hoshino
CYTOKINE 46 ( 3 ) 302 - 308 2009.6
-
Identification of a Regulatory T Cell Specific Cell Surface Molecule that Mediates Suppressive Signals and Induces Foxp3 Expression
Rui Wang, Qi Wan, Lina Kozhaya, Hodaka Fujii, Derya Unutmaz
PLOS ONE 3 ( 7 ) e2705 2008.7
-
Receptor expression is essential for proliferation induced by dimerized Jak kinases
Hodaka Fujii
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 370 ( 4 ) 557 - 560 2008.6
-
Plasmodium circumsporozoite protein promotes the development of the liver stages of the parasite
Agam Prasad Singh, Carlos A. Buscaglia, Qian Wang, Agata Levay, Daniel R. Nussenzweig, John R. Walker, Elizabeth A. Winzeler, Hodaka Fujii, Beatriz M. A. Fontoura, Victor Nussenzweig
CELL 131 ( 3 ) 492 - 504 2007.11
-
Temporal regulation of Stat5 activity in determination of cell differentiation program
Akemi Hoshino, Hodaka Fujii
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 358 ( 3 ) 914 - 919 2007.7
-
Cell type-specific roles of Jak3 in IL-2-induced proliferative signal transduction
Hodaka Fujii
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 354 ( 3 ) 825 - 829 2007.3
-
Redundant promoter elements mediate IL-3-induced expression of a novel cytokine-inducible gene, cyclon
Akemi Hoshino, Hodaka Fujii
FEBS LETTERS 581 ( 5 ) 975 - 980 2007.3
-
Nuclear translocation of 2-amino-3-ketobutyrate coenzyme A ligase by cold and osmotic stress
HOSHINO A, FUJII H
CELL STRESS & CHAPERONES 12 ( 2 ) 186 - 191 2007.1
-
Regulation of Stat1 protein expression by phenylalanine 172 in the coiled-coil domain
Akerni Hoshino, Shella Saint Fleur, Hodaka Fujii
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS 346 ( 3 ) 1062 - 1066 2006.8
-
Inducible translocation trap: A system for detecting inducible nuclear translocation
A Hoshino, S Matsumura, K Kondo, JA Hirst, H Fujii
MOLECULAR CELL 15 ( 1 ) 153 - 159 2004.7
-
Enforced expression of the Ikaros isoform IK5 decreases the numbers of extrathymic intraepithelial lymphocytes and natural killer 1.1(+) T cells
SN Tucker, HK Jessup, H Fujii, CB Wilson
BLOOD 99 ( 2 ) 513 - 519 2002.1
-
Defective expression of the interleukin-2/interleukin-15 receptor beta subunit leads to a natural killer cell-deficient form of severe combined immunodeficiency
KC Gilmour, H Fujii, T Cranston, EG Davies, C Kinnon, HB Gaspar
BLOOD 98 ( 3 ) 877 - 879 2001.8
-
Differential requirement of the cytoplasmic subregions of gamma c chain in T cell development and function
S Tsujino, JP Di Santo, A Takaoka, TL McKernan, S Noguchi, C Taya, H Yonekawa, T Saito, T Taniguchi, H Fujii
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 97 ( 19 ) 10514 - 10519 2000.9
-
Critical role of the membrane-proximal, proline-rich motif of the interleukin-2 receptor gamma c chain in the Jak3-independent signal transduction
S Tsujino, T Miyazaki, A Kawahara, M Maeda, T Taniguchi, H Fujii
GENES TO CELLS 4 ( 6 ) 363 - 373 1999.6
-
Protein tyrosine kinase Pyk2 mediates the Jak-dependent activation of MAPK and Stat1 in IFN-gamma, but not IFN-alpha, signaling
A Takaoka, N Tanaka, Y Mitani, T Miyazaki, H Fujii, M Sato, P Kovarik, T Decker, J Schlessinger, T Taniguchi
EMBO JOURNAL 18 ( 9 ) 2480 - 2488 1999.5
-
Functional dissection of the cytoplasmic subregions of the IL-2 receptor beta c chain in primary lymphocyte populations
H Fujii, K Ogasawara, H Otsuka, M Suzuki, K Yamamura, T Yokochi, T Miyazaki, H Suzuki, TW Mak, S Taki, T Taniguchi
EMBO JOURNAL 17 ( 22 ) 6551 - 6557 1998.11
-
Pyk2 is a downstream mediator of the IL-2 receptor-coupled Jak signaling pathway
T Miyazaki, A Takaoka, L Nogueira, Dikic, I, H Fujii, S Tsujino, Y Mitani, M Maeda, J Schlessinger, T Taniguchi
GENES & DEVELOPMENT 12 ( 6 ) 770 - 775 1998.3
-
ACTIVATION OF STAT5 BY INTERLEUKIN-2 REQUIRES A CARBOXYL-TERMINAL REGION OF THE INTERLEUKIN-2 RECEPTOR-BETA CHAIN BUT IS NOT ESSENTIAL FOR THE PROLIFERATIVE SIGNAL TRANSMISSION
H FUJII, Y NAKAGAWA, U SCHINDLER, A KAWAHARA, H MORI, F GOUILLEUX, B GRONER, JN IHLE, Y MINAMI, T MIYAZAKI, T TANIGUCHI
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 92 ( 12 ) 5482 - 5486 1995.6
-
FUNCTIONAL ACTIVATION OF JAK1 AND JAK3 BY SELECTIVE ASSOCIATION WITH IL-2 RECEPTOR SUBUNITS
T MIYAZAKI, A KAWAHARA, H FUJII, Y NAKAGAWA, Y MINAMI, ZJ LIU, OISHI, I, O SILVENNOINEN, BA WITTHUHN, JN IHLE, T TANIGUCHI
SCIENCE 266 ( 5187 ) 1045 - 1047 1994.11
-
REGULATION OF PROTEIN-KINASE-C ISOFORM PROTEINS IN PHORBOL ESTER-STIMULATED JURKAT T-LYMPHOMA CELLS
A TSUTSUMI, M KUBO, H FUJII, J FREIREMOAR, CW TURCK, JT RANSOM
JOURNAL OF IMMUNOLOGY 150 ( 5 ) 1746 - 1754 1993.3