Papers - TAMADA Yoshinori
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Maternal Genetic Variants and Gestational Duration: A Replication Study in a Japanese Cohort
Rina Tanabu, Kaori Iino, Maki Sato, Mako Nakamura, Macthi Yokoyama, Yoshinori Tamada, Ken Itoh, Tatsuya Mikami, Koichi Murashita, Yoshihito Yokoyama
Journal of Clinical Medicine 15 ( 11 ) 2026.6
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Influence of social determinants of health on locomotive syndrome
Okuma Katsunobu, Ishida Mizuri, Ikeda Yuichi, Hirakawa Yuichi, Kamitani Hidefumi, Tsushima Eiki, Mikami Tatsuya, Tamada Yoshinori, Murashita Koichi, Nakaji Shigeyuki
Hirosaki Medical Journal 76 ( 1-4 ) 69 - 81 2026.3
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Green Tea Catechin Plus Inulin Improves Insulin Resistance Without Reducing Visceral Fat and Shows Exploratory Gut Microbiota Signals in Adults with Visceral Obesity: A Double-Blind Randomized Controlled Trial
Chikara Iino, Keita Mikami, Keisuke Furusawa, Satoshi Sato, Kenta Yoshida, Tohru Yamaguchi, Hiroto Bushita, Keita Kinoshita, Yuji Matsui, Seiya Imoto, Takuro Iwane, Yoshinori Tamada, Koichi Murashita, Shigeyuki Nakaji, Tatsuya Mikami, Hirotake Sakuraba
Nutrients 18 ( 5 ) 851 - 851 2026.3
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Classification of the tongue microbiota and its associations with lifestyle factors and health status.
Yamauchi T, Waki N, Suzuki S, Tanaka T, Yokoyama S, Murashita K, Mikami T, Tamada Y, Itoh K, Tamura Y, Kobayashi W
NPJ biofilms and microbiomes 12 ( 1 ) 2026.2
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Association between dairy consumption, gut microbiome composition, and lipid biomarkers in Japanese adults: A cross-sectional analysis from the Iwaki health promotion project
Ayatake Nakano, Daisuke Kawata, Hiroshi M. Ueno, Yota Tatara, Mizuri Ishida, Yoshinori Tamada, Tatsuya Mikami, Koichi Murashita, Ken Itoh
INTERNATIONAL DAIRY JOURNAL 173 2026.2
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Blood and skin carotenoid levels are inversely associated with the prevalence of periodontal diseases in populations with normal occlusion: a cross-sectional analysis from the Iwaki health promotion project.
Toshitaka Yamauchi, Naoko Waki, Shigenori Suzuki, Kenji Fujimoto, Tatsuya Mikami, Koichi Murashita, Shigeyuki Nakaji, Ken Itoh, Yoshinori Tamada, Yoshihiro Tamura, Wataru Kobayashi
Nutrition journal 25 ( 1 ) 2026.1
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Stability of equol production capability is associated with the diversity of the gut microbiota of the host: a prospective cohort study.
Iino K, Iino C, Song S, Sato M, Nakamura M, Tanabu R, Higuchi T, Tamada Y, Itoh K, Sato N, Imoto S, Mikami T, Murashita K, Yokoyama Y
BMC microbiology 26 ( 1 ) 141 2026.1
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Using Machine Learning to Identify Factors Affecting Antibody Production and Adverse Reactions After COVID-19 Vaccination
Nahomi Miyamoto, Tohru Yamaguchi, Yoshinori Tamada, Seiya Yamayoshi, Koichi Murashita, Ken Itoh, Seiya Imoto, Norihiro Saito, Tatsuya Mikami, Shigeyuki Nakaji
Vaccines 14 ( 2 ) 2026.1
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Optimizing Gene Regulatory Networks Inference Application on a Vector Processor
Yoshiyuki Kido, Sosuke Kamisako, Yoshinori Tamada, Yasushi Okuno
2025 2nd Beyond Technology Summit on Informatics International Conference (BTS-I2C) 66 - 71 2025.12
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Longitudinal trajectories of health-related quality of life and their predictors among community-dwelling older adults
Ryoga Oshima, Yuki Ohashi, Takuro Iwane, Yoshinori Tamada, Fumie Kinoshita, Tomoya Ito, Yuto Okumura, Tatsuya Mikami, Ken Itoh, Koichi Murashita, Masahiro Nakatochi
SCIENTIFIC REPORTS 16 ( 1 ) 872 2025.12
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Self-reported lactose intolerance is inversely associated with calcium intake and bone mineral density: a cross-sectional data analysis from the Iwaki Health Promotion Project
Daisuke Kawata, Ayatake Nakano, Hiroshi M. Ueno, Yota Tatara, Eiji Sasaki, Yasuyuki Ishibashi, Yoshinori Tamada, Tatsuya Mikami, Koichi Murashita, Shigeyuki Nakaji, Ken Itoh
EUROPEAN JOURNAL OF NUTRITION 65 ( 1 ) 4 2025.12
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The influence of vascular risk factors and aging on choroid plexus enlargement
Keita Watanabe, Jusei Kudo, Miho Sasaki, Tomohiro Shintaku, Shinya Kakehata, Sera Kasai, Kana Saito, Tatsuya Mikami, Yoshinori Tamada, Shingo Kakeda
EUROPEAN RADIOLOGY 36 ( 5 ) 3869 - 3878 2025.12
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Multi-marker discovery for mild cognitive impairment in metabolomics using machine learning with a global surrogate model via partial least squares
Yota Tatara, Hiroyuki Yamamoto, Kozue Terai, Rira Matsuta, Shuya Kasai, Yoshinori Tamada, Tatsuya Mikami, Koichi Murashita, Ken Itoh
METABOLOMICS 21 ( 6 ) 164 2025.11
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Correction: Effect of visceral fat on onset of metabolic syndrome.
Bushita H, Ozato N, Mori K, Kawada H, Katsuragi Y, Osaki N, Mikami T, Itoh K, Murashita K, Nakaji S, Tamada Y
Scientific reports 15 ( 1 ) 34820 2025.10
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Altered connectivity among the triple brain networks in patients with mild cognitive impairment: a source-based morphometry study with a large elderly population
Chihiro Yotsuya, Keita Watanabe, Sera Kasai, Yoshihito Umemura, Tomohiro Shintaku, Yuka Ishimoto, Miho Sasaki, Haruka Nagaya, Soichiro Tatsuo, Tatsuya Mikami, Yoshinori Tamada, Satoru Ide, Masahiko Tomiyama, Shingo Kakeda
JAPANESE JOURNAL OF RADIOLOGY 43 ( 9 ) 1434 - 1444 2025.9
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Network analysis reveals causal relationships among individual background risk factors leading to influenza susceptibility
Akihide Terada, Kenji Fujimoto, Kazuyoshi Kise, Kenta Fujiwara, Eiichiro Uchino, Yutaka Mizuma, Yoshinori Nishioku, Kenzo Takahashi, Ken Itoh, Tatsuya Mikami, Koichi Murashita, Shigeyuki Nakaji, Yukihiro Fujita, Yasushi Okuno, Yoshinori Tamada
SCIENTIFIC REPORTS 15 ( 1 ) 30721 2025.8
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Publisher Correction: Graphical model analysis of subjective well-being and various factors in Japanese adults from the Iwaki cross-sectional study.
Sakai S, Onoda A, Hasegawa E, Kawanishi I, Ikeda G, Murashita K, Itoh K, Tamada Y, Mikami T, Nakaji S, Furuta C
Scientific reports 15 ( 1 ) 28570 2025.8
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Out-of-distribution reject option method for dataset shift problem in early disease onset prediction.
Tosaki T, Uchino E, Kojima R, Mineharu Y, Okamoto Y, Arita M, Miyai N, Tamada Y, Mikami T, Murashita K, Nakaji S, Okuno Y
Scientific reports 15 ( 1 ) 19240 2025.6
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Targeted Outreach by an Insurance Company Improved Dietary Habits and Urine Sodium/Potassium Ratios Among High-Risk Individuals with Lifestyle-Related Diseases
Sunao Tanaka, Junji Fukui, Akira Otsu, Shintaro Yokoyama, Tsukasa Tanaka, Kaori Sawada, Shigeyuki Nakaji, Yoshinori Tamada, Koichi Murashita, Tatsuya Mikami
Nutrients 17 ( 13 ) 2025.6
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Effect of visceral fat on onset of metabolic syndrome
Hiroto Bushita, Naoki Ozato, Kenta Mori, Hiromitsu Kawada, Yoshihisa Katsuragi, Noriko Osaki, Tatsuya Mikami, Ken Itoh, Koichi Murashita, Shigeyuki Nakaji, Yoshinori Tamada
SCIENTIFIC REPORTS 15 ( 1 ) 19012 2025.5
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Graphical model analysis of subjective well-being and various factors in Japanese adults from the Iwaki cross-sectional study
Shunji Sakai, Akito Onoda, Emi Hasegawa, Ippei Kawanishi, Gakuro Ikeda, Koichi Murashita, Ken Itoh, Yoshinori Tamada, Tatcsuya Mikami, Shigeyuki Nakaji, Chie Furuta
SCIENTIFIC REPORTS 15 ( 1 ) 14570 2025.4
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Peripheral blood <i>GATA2</i> expression impacts <i>RNF213</i> mutation penetrance and clinical severity in moyamoya disease
Yohei Mineharu, Takahiko Kamata, Mei Tomoto, Noriaki Sato, Yoshinori Tamada, Takeshi Funaki, Yuki Oichi, Kouji H. Harada, Akio Koizumi, Tetsuaki Kimura, Ituro Inoue, Yasushi Okuno, Susumu Miyamoto, Yoshiki Arakawa
STROKE AND VASCULAR NEUROLOGY 10 ( 6 ) 752 - 763 2025.4
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Examination of factors that lead to the transition of community-dwelling older adults to a state requiring support and care : A longitudinal study on factors influencing locomotive syndrome
Ikeda Yuichi, Ishida Mizuri, Okuma Katsunobu, Hirakawa Yuichi, Kamitani Hidefumi, Tsushima Eiki, Tamada Yoshinori, Mikami Tatsuya, Itoh Ken, Murashita Koichi, Nakaji Shigeyuki
Hirosaki Medical Journal 75 ( 2-4 ) 129 - 141 2025.3
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Outcome of basal cell carcinoma excision with 2 mm surgical margin in Japanese patients: A retrospective study of one-step surgery.
Kaori Kyono, Yoshinori Tamada, Michito Ara, Shin-Ichiro Yamagishi, Ayako Higuchi, Keiichiro Iida, Naoko Wada, Makoto Mikami, Satoshi Urushidate
JPRAS OPEN 43 216 - 226 2025.3
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Dairy consumption has a partial inverse association with systolic blood pressure and hypertension in populations with high salt and low dairy diets: cross-sectional data analysis from the Iwaki Health Promotion Project
Daisuke Kawata, Hiroshi M. Ueno, Ayatake Nakano, Yota Tatara, Yoshinori Tamada, Tatsuya Mikami, Koichi Murashita, Shigeyuki Nakaji, Ken Itoh
HYPERTENSION RESEARCH 48 ( 4 ) 1409 - 1421 2025.1
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Acquisition of a set of genes involved in the growth suppression by BMP inhibition in colorectal cancer
Shuto Aoki, Jumpei Kondo, Akari Minamiura, Koki Oyama, Daisuke Sakon, Kasumi Ohta, Yohei Harada, Mai Nakazawaadachi, Yoshinori Tamada, Yasushi Okuno, Masahiro Inoue, Eiji Miyoshi
CANCER SCIENCE 116 1539 - 1539 2025.1
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Association of visceral fat area with early-stage locomotive syndrome across various age groups: a cross-sectional study.
Tadashi Miyazaki, Naoki Ozato, Tohru Yamaguchi, Yoko Sugiura, Hiromitsu Kawada, Yoshihisa Katsuragi, Noriko Osaki, Tatsuya Mikami, Ken Ito, Koichi Murashita, Shigeyuki Nakaji, Yoshinori Tamada
Scientific reports 14 ( 1 ) 25498 - 25498 2024.10
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Dairy consumption, bone turnover biomarkers, and osteo sono assessment index in Japanese adults: A cross-sectional analysis of data from the Iwaki Health Promotion Project
Nakano, A., Ueno, H.M., Kawata, D., Tatara, Y., Tamada, Y., Mikami, T., Murashita, K., Nakaji, S., Itoh, K.
Bone Reports 21 101770 2024.6
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Association between Gut Microbiota and Muscle Strength in Japanese General Population of the Iwaki Health Promotion Project
Yoshikuni Sugimura, Yichi Yang, Akira Kanda, Akihiro Mawatari, Yoshinori Tamada, Tatsuya Mikami, Shigeyuki Nakaji, Kazushige Ihara
Microorganisms 12 ( 3 ) 622 - 622 2024.3
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FLAIR Hyperintensities in the Anterior Part of the Callosal Splenium in the Elderly Population: A Large Cohort Study
Kasai, S., Watanabe, K., Ide, S., Ishimoto, Y., Sasaki, M., Umemura, Y., Tatsuo, S., Kakeda, S., Mikami, T., Tamada, Y., Miki, Y., Wakabayashi, K., Tomiyama, M., Kakeda, S.
Academic Radiology 31 ( 7 ) 2922 - 2929 2024.2
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Effects of rewarming therapies on outcomes in accidental hypothermia: A secondary analysis of a multicenter prospective study
Sugiyama, K., Nomura, O., Irie, J., Ishizawa, Y., Takauji, S., Hayakawa, M., Tamada, Y., Hanada, H.
American Journal of Emergency Medicine 79 91 - 96 2024.2
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Strategies for promoting health in society utilizing quality-of-life check-ups: a protocol paper
Nakaji Shigeyuki, Murashita Koichi, Mikami Tatsuya, Tamada Yoshinori, Uemura Nozomi
Preventive Medicine Research 1 ( 4 ) 43 - 54 2024.1
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Idiopathic pulmonary fibrosis-specific Bayesian network integrating extracellular vesicle proteome and clinical information
Mei Tomoto, Yohei Mineharu, Noriaki Sato, Yoshinori Tamada, Mari Nogami-Itoh, Masataka Kuroda, Jun Adachi, Yoshito Takeda, Kenji Mizuguchi, Atsushi Kumanogoh, Yayoi Natsume-Kitatani, Yasushi Okuno
Scientific Reports 14 ( 1 ) 1315 2024.1
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Choroid plexus enlargement in mild cognitive impairment on MRI: a large cohort study
Umemura, Y., Watanabe, K., Kasai, S., Ide, S., Ishimoto, Y., Sasaki, M., Nagaya, H., Tatsuo, S., Mikami, T., Tamada, Y., Tomiyama, M., Kakeda, S.
European Radiology 34 ( 8 ) 5297 - 5304 2024.1
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A Study of the Relationship Between Driving and Health Based on Large-Scale Data Analysis Using PLSA and t-SNE
Mera, M., Michida, N., Honda, M., Sakamoto, K., Tamada, Y., Mikami, T., Nakaji, S.
IEEE Access 12 2024
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Association between hemoglobin levels and cerebral white matter volume in a general older Japanese population: the Iki-Iki study
Yamamoto, H., Watanabe, K., Momma, S., Tatsuo, S., Matsuzaka, M., Tamada, Y., Mikami, T., Nakaji, S., Kakeda, S.
Neuroradiology 67 ( 3 ) 575 - 581 2024
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Association between NF-E2-related factor 2 polymorphism and age-related hearing loss in the general Japanese population from the Iwaki health promotion project
Kasai, T., Sasaki, A., Kasai, S., Miura, S., Goto, S., Yotsuyanagi, R., Mikami, T., Tamada, Y., Itoh, K., Matsubara, A.
Acta Oto-Laryngologica 145 ( 1 ) 36 - 42 2024
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Subgrouping Causal Networks of Disease Onset in Large-scale Health and Medical Data using Supercomputer Fugaku
Taisei Tosaki, Eiichiro Uchino, Yohei Harada, Minoru Sakuragi, Yusuke Koyanagi, Seiji Okajima, Hirofumi Suzuki, Kentaro Kanamori, Masahiro Asaoka, Kouji Kurihara, Takuya Takagi, Koji Maruhashi, Yoshinori Tamada, Tatsuya Mikami, Koichi Murashita, Shigeyuki Nakaji, Yasushi Okuno
IEEE BIBM the International Workshop on Foundations of Network Analysis 4384 - 4391 2024
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Altered structural hippocampal intra-networks in a general elderly Japanese population with mild cognitive impairment
Kasai, S., Watanabe, K., Umemura, Y., Ishimoto, Y., Sasaki, M., Nagaya, H., Tatsuo, S., Mikami, T., Tamada, Y., Ide, S., Tomiyama, M., Matsuzaka, M., Kakeda, S.
Scientific Reports 13 ( 1 ) 13330 2023.8
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Individual health-disease phase diagrams for disease prevention based on machine learning
Kazuki Nakamura, Eiichiro Uchino, Noriaki Sato, Ayano Araki, Kei Terayama, Ryosuke Kojima, Koichi Murashita, Ken Itoh, Tatsuya Mikami, Yoshinori Tamada, Yasushi Okuno
Journal of Biomedical Informatics 144 104448 - 104448 2023.8
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Inhibition of the bone morphogenetic protein pathway suppresses tumor growth through downregulation of epidermal growth factor receptor in MEK/ERK-dependent colorectal cancer.
Shota Shimizu, Jumpei Kondo, Kunishige Onuma, Roberto Coppo, Kasumi Ota, Mayumi Kamada, Yohei Harada, Yoshihisa Tanaka, Mai Adachi Nakazawa, Yoshinori Tamada, Yasushi Okuno, Kenji Kawada, Kazutaka Obama, Robert J Coffey, Yoshiyuki Fujiwara, Masahiro Inoue
Cancer science 114 ( 9 ) 3636 - 3648 2023.6
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Definition of a Dietary Pattern Expressing the Intake of Vegetables and Fruits and Its Association with Intestinal Microbiota
Toshitaka Yamauchi, Naoko Koyama, Ayumi Hirai, Hiroyuki Suganuma, Shigenori Suzuki, Koichi Murashita, Tatsuya Mikami, Yoshinori Tamada, Noriaki Sato, Seiya Imoto, Ken Itoh, Shigeyuki Nakaji
Nutrients 15 ( 9 ) 2023.4
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Multiomics and artificial intelligence enabled peripheral blood-based prediction of amnestic mild cognitive impairment
Yota Tatara, Hiromi Yamazaki, Fumiki Katsuoka, Mitsuru Chiba, Daisuke Saigusa, Shuya Kasai, Tomohiro Nakamura, Jin Inoue, Yuichi Aoki, Miho Shoji, Ikuko N. Motoike, Yoshinori Tamada, Katsuhito Hashizume, Mikio Shoji, Kengo Kinoshita, Koichi Murashita, Shigeyuki Nakaji, Masayuki Yamamoto, Ken Itoh
Current Research in Translational Medicine 71 ( 1 ) 103367 - 103367 2023.1
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Effect of gut microbial composition and diversity on major inhaled allergen sensitization and onset of allergic rhinitis
Yamaguchi Taimu, Nomura Ayami, Matsubara Atsushi, Hisada Takayoshi, Tamada Yoshinori, Mikami Tatsuya, Ishida Mizuri
Allergology International 72 ( 1 ) 135 - 142 2023
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AI target prediction Using Fugaku and gene network analysis
Tamada Yoshinori
Proceedings for Annual Meeting of The Japanese Pharmacological Society 97 ( 0 ) 1-B-S04-1 2023
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Association of Gut Microbial Genera with Heart Rate Variability in the General Japanese Population: The Iwaki Cross-Sectional Research Study.
Masaya Tsubokawa, Miyuki Nishimura, Tatsuya Mikami, Mizuri Ishida, Takayoshi Hisada, Yoshinori Tamada
Metabolites 12 ( 8 ) 2022.8
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Correlation between Glycation-Related Biomarkers and Quality of Life in the General Japanese Population: The Iwaki Cross-Sectional Research Study
Masaya Tsubokawa, Miyuki Nishimura, Koichi Murashita, Takuro Iwane, Yoshinori Tamada
International Journal of Environmental Research and Public Health 19 ( 15 ) 2022.7
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Factors Associated with Reduced Heart Rate Variability in the General Japanese Population: The Iwaki Cross-Sectional Research Study
Masaya Tsubokawa, Miyuki Nishimura, Yoshinori Tamada, Shigeyuki Nakaji
Healthcare 10 ( 5 ) 2022.4
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CBNplot: Bayesian network plots for enrichment analysis
Noriaki Sato, Yoshinori Tamada, Guangchuang YU, Yasushi Okuno
Bioinformatics 38 ( 10 ) 2959 - 2960 2022.3
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Two Blautia Species Associated with Visceral Fat Accumulation: A One-Year Longitudinal Study.
Naoki Ozato, Tohru Yamaguchi, Kenta Mori, Mitsuhiro Katashima, Mika Kumagai, Koichi Murashita, Yoshihisa Katsuragi, Yoshinori Tamada, Masanori Kakuta, Seiya Imoto, Kazushige Ihara, Shigeyuki Nakaji
Biology 11 ( 2 ) 2022.2
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Novel cancer subtyping method based on patient-specific gene regulatory network.
Mai Adachi Nakazawa, Yoshinori Tamada, Yoshihisa Tanaka, Marie Ikeguchi, Kako Higashihara, Yasushi Okuno
Scientific reports 11 ( 1 ) 23653 - 23653 2021.12
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Dynamic changes in gene-to-gene regulatory networks in response to SARS-CoV-2 infection
Yoshihisa Tanaka, Kako Higashihara, Mai Adachi Nakazawa, Fumiyoshi Yamashita, Yoshinori Tamada, Yasushi Okuno
Scientific Reports 11 ( 1 ) 11241 - 11241 2021.5
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Classification of glomerular pathological findings using deep learning and nephrologist–AI collective intelligence approach
Eiichiro Uchino, Kanata Suzuki, Noriaki Sato, Ryosuke Kojima, Yoshinori Tamada, Shusuke Hiragi, Hideki Yokoi, Nobuhiro Yugami, Sachiko Minamiguchi, Hironori Haga, Motoko Yanagita, Yasushi Okuno
International Journal of Medical Informatics 141 104231 - 104231 2020.9
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Variant analysis of prostate cancer in Japanese patients and a new attempt to predict related biological pathways.
Rika Kasajima, Rui Yamaguchi, Eigo Shimizu, Yoshinori Tamada, Atsushi Niida, George Tremmel, Takeshi Kishida, Ichiro Aoki, Seiya Imoto, Satoru Miyano, Hiroji Uemura, Yohei Miyagi
Oncology reports 43 ( 3 ) 943 - 952 2020.3
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System-based differential gene network analysis for characterizing a sample-specific subnetwork
Yoshihisa Tanaka, Yoshinori Tamada, Marie Ikeguchi, Fumiyoshi Yamashita, Yasushi Okuno
Biomolecules 10 ( 2 ) 2020.2
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Memory efficient parallel algorithm for optimal DAG structure search using direct communication
Yoshinori Tamada
Journal of Parallel and Distributed Computing 119 27 - 35 2018
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Oncogenic roles of TOPK and MELK, and effective growth suppression by small molecular inhibitors in kidney cancer cells
Taigo Kato, Hiroyuki Inoue, Seiya Imoto, Yoshinori Tamada, Takashi Miyamoto, Yo Matsuo, Yusuke Nakamura, Jae-Hyun Park
Oncotarget 7 ( 14 ) 17652 - 64 2016.4
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The hnRNP-Htt axis regulates necrotic cell death induced by transcriptional repression through impaired RNA splicing
Y. Mao, T. Tamura, Y. Yuki, D. Abe, Y. Tamada, S. Imoto, H. Tanaka, H. Homma, K. Tagawa, S. Miyano, H. Okazawa
CELL DEATH & DISEASE 7 e2207 2016.4
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Efficient parallel algorithm for optimal DAG structure search on parallel computer with torus network
Honda, H., Tamada, Y., Suda, R.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 10048 LNCS 2016
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Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs
Asuka Nakata, Ryo Yoshida, Rui Yamaguchi, Mai Yamauchi, Yoshinori Tamada, Andre Fujita, Teppei Shimamura, Seiya Imoto, Tomoyuki Higuchi, Masaharu Nomura, Tatsuo Kimura, Hiroshi Nokihara, Masahiko Higashiyama, Kazuya Kondoh, Hiroshi Nishihara, Arinobu Tojo, Seiji Yano, Satoru Miyano, Noriko Gotoh
Scientific Reports 5 ( 1 ) 13076 2015.8
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Lung adenocarcinoma subtypes definable by lung development-related miRNA expression profiles in association with clinicopathologic features
Chinatsu Arima, Taisuke Kajino, Yoshinori Tamada, Seiya Imoto, Yukako Shimada, Masahiro Nakatochi, Motoshi Suzuki, Hisanori Isomura, Yasushi Yatabe, Tomoya Yamaguchi, Kiyoshi Yanagisawa, Satoru Miyano, Takashi Takahashi
Carcinogenesis 35 ( 10 ) 2224 - 2231 2014.6
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Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis
Muna Affara, Debbie Sanders, Hiromitsu Araki, Yoshinori Tamada, Benjamin J Dunmore, Sally Humphreys, Seiya Imoto, Christopher Savoie, Satoru Miyano, Satoru Kuhara, David Jeffries, Cristin Print, D Stephen Charnock-Jones
BMC Genomics 14 ( 1 ) 23 - 23 2013
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Cell Cycle Gene Networks Are Associated with Melanoma Prognosis
Li Wang, Daniel G. Hurley, Wendy Watkins, Hiromitsu Araki, Yoshinori Tamada, Anita Muthukaruppan, Louis Ranjard, Eliane Derkac, Seiya Imoto, Satoru Miyano, Edmund J. Crampin, Cristin G. Print, Ying Xu
PLoS ONE 7 ( 4 ) e34247 2012.4
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Computational gene network analysis reveals TNF-induced angiogenesis
Kentaro Ogami, Rui Yamaguchi, Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Cristin Print, Satoru Miyano
BMC Systems Biology 6 ( Suppl 2 ) S12 2012
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Gene network inference and visualization tools for biologists: application to new human transcriptome datasets
Daniel Hurley, Hiromitsu Araki, Yoshinori Tamada, Ben Dunmore, Deborah Sanders, Sally Humphreys, Muna Affara, Seiya Imoto, Kaori Yasuda, Yuki Tomiyasu, Kosuke Tashiro, Christopher Savoie, Vicky Cho, Stephen Smith, Satoru Kuhara, Satoru Miyano, D. Stephen Charnock-Jones, Edmund J. Crampin, Cristin G. Print
Nucleic Acids Research 40 ( 6 ) 2377 - 2398 2011.11
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Estimating Genome-Wide Gene Networks Using Nonparametric Bayesian Network Models on Massively Parallel Computers
Y Tamada, S Imoto, H Araki, M Nagasaki, C Print, D S Charnock-Jones, S Miyano
IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 ( 3 ) 683 - 697 2011.5
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SiGN-SSM: Open source parallel software for estimating gene networks with state space models
Tamada, Y., Yamaguchi, R., Imoto, S., Hirose, O., Yoshida, R., Nagasaki, M., Miyano, S.
Bioinformatics 27 ( 8 ) 1172 - 3 2011
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Searching optimal Bayesian network structure on constraint search space: Super-structure approach
Imoto, S., Kojima, K., Perrier, E., Tamada, Y., Miyano, S.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 6797 LNAI 2011
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Parallel algorithm for learning optimal bayesian network structure
Tamada, Y., Imoto, S., Miyano, S.
Journal of Machine Learning Research 12 2011
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Collocation-based sparse estimation for constructing dynamic gene networks.
Shimamura T, Imoto S, Nagasaki M, Yamauchi M, Yamaguchi R, Fujita A, Tamada Y, Gotoh N, Miyano S
Genome informatics. International Conference on Genome Informatics 24 164 - 78 2010
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Analysis of PPARα-dependent and PPARα-independent transcript regulation following fenofibrate treatment of human endothelial cells
Hiromitsu Araki, Yoshinori Tamada, Seiya Imoto, Ben Dunmore, Deborah Sanders, Sally Humphrey, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Kaori Yasuda, Yuki Tomiyasu, Kousuke Tashiro, Cristin Print, D. Stephen Charnock-Jones, Satoru Kuhara, Satoru Miyano
Angiogenesis 12 ( 3 ) 221 - 229 2009.4
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Gene networks viewed through two models
Miyano, S., Yamaguchi, R., Tamada, Y., Nagasaki, M., Imoto, S.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 5462 LNBI 2009
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Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks.
Yoshinori Tamada, Hiromitsu Araki, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Yuki Tomiyasu, Kaori Yasuda, Ben Dunmore, Deborah Sanders, Sally Humphreys, Cristin Print, D Stephen Charnock-Jones, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 251 - 63 2009
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A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human.
Hatanaka Y, Nagasaki M, Yamaguchi R, Obayashi T, Numata K, Fujita A, Shimamura T, Tamada Y, Imoto S, Kinoshita K, Nakai K, Miyano S
Genome informatics. International Conference on Genome Informatics 20 212 - 21 2008
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Analysis of gene networks for drug target discovery and validation.
Imoto S, Tamada Y, Savoie CJ, Miyano S
Methods in molecular biology (Clifton, N.J.) 360 33 - 56 2007
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Understanding endothelial cell apoptosis: What can the transcriptome, glycome and proteome reveal?
Affara, M., Dunmore, B., Savoie, C., Imoto, S., Tamada, Y., Araki, H., Charnock-Jones, D.S., Miyano, S., Print, C.
Philosophical Transactions of the Royal Society B: Biological Sciences 362 ( 1484 ) 1469 - 87 2007
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Graph Mining and Its Application to Statistical Modeling
54 ( 2 ) 315 - 331 2006.12
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Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles.
Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Kaori Yasuda, Cristin G Print, Stephen D Charnock-Jones, Deborah Sanders, Christopher J Savoie, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 559 - 71 2006
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Utilizing Heterogeneous Genomic Data to Estimate Gene Networks
54 ( 2 ) 333 - 356 2006
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Genomic data assimilation for estimating hybrid functional Petri net from time-course gene expression data.
Nagasaki M, Yamaguchi R, Yoshida R, Imoto S, Doi A, Tamada Y, Matsuno H, Miyano S, Higuchi T
Genome informatics. International Conference on Genome Informatics 17 ( 1 ) 46 - 61 2006
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From closed tree mining towards closed DAG mining
1 - 7 2006
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Estimating gene networks from expression data and binding location data via Boolean networks
O Hirose, N Nariai, Y Tamada, H Bannai, S Imoto, S Miyano
COMPUTATIONAL SCIENCE AND ITS APPLICATIONS - ICCSA 2005, PT 3 3482 349 - 356 2005
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Utilizing evolutionary information and gene expression data for estimating gene networks with Bayesian network models
Tamada, Y., Bannai, H., Imoto, S., Katayama, T., Kanehisa, M., Miyano, S.
Journal of Bioinformatics and Computational Biology 3 ( 6 ) 1295 - 1313 2005
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Identifying drug active pathways from gene networks estimated by gene expression data.
Tamada Y, Imoto S, Tashiro K, Kuhara S, Miyano S
Genome informatics. International Conference on Genome Informatics 16 ( 1 ) 182 - 91 2005
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Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data
Nariai, N., Tamada, Y., Imoto, S., Miyano, S.
Bioinformatics 21 ( SUPPL. 2 ) ii206 - 12 2005
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Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection
Tamada, Y., Kim, S., Bannai, H., Imoto, S., Tashiro, K., Kuhara, S., Miyano, S.
Bioinformatics 19 ( SUPPL. 2 ) ii227 - 36 2003
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Intrasplicing--analysis of long intron sequences.
Ott, S., Tamada, Y., Bannai, H., Nakai, K., Miyano, S.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2003
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Fast algorithm for extracting multiple unordered short motifs using bit operations
Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano
Information Sciences 146 ( 1-4 ) 115 - 126 2002.10
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Extensive feature detection of N-terminal protein sorting signals.
Bannai H, Tamada Y, Maruyama O, Nakai K, Miyano S
Bioinformatics (Oxford, England) 18 ( 2 ) 298 - 305 2002.2
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Fast algorithm for extracting multiple unordered short motifs using bit operations
O Maruyama, H Bannai, Y Tamada, S Kuhara, S Miyano
PROCEEDINGS OF THE 6TH JOINT CONFERENCE ON INFORMATION SCIENCES 1180 - 1185 2002
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Foundations of designing computational knowledge discovery processes
Tamada, Y., Bannai, H., Maruyama, O., Miyano, S.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2281 2002
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Concepts for Accelerating the Computational Knowledge Discovery Process
Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano
Linkoping Electronic Articles in Computer and Information Science 6 2001
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VML: A View Modeling Language for computational knowledge discovery
Bannai, H., Tamada, Y., Maruyama, O., Miyano, S.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2226 2001
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Views: Fundamental Building Blocks in the Process of Knowledge Discovery
Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano
Proceedings of the 14th International FLAIRS Conference 233 - 238 2001
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HypothesisCreator: Concepts for Accelerating the Computational Knowledge Discovery Process.
Hideo Bannai, Yoshinori Tamada, Osamu Maruyama, Satoru Miyano
Electron. Trans. Artif. Intell. 5 ( B ) 73 - 83 2001