研究者詳細 - 柏木　明子

論文 - 柏木　明子

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Comparative genomic and functional analysis of two Escherichia coli L-form strains reveals the dispensability of multiple essential genes

Yunfei Liu; Chen Kang; Yueyue Zhang; Di Tian; Hui Lu; Boying Xu; Yang Xia; Akiko Kashiwagi; Martin Westermann; Christian Hoischen; Jian Xu; Tetsuya Yomo

Bioscience Reports 43 BSR20231227 2023年10月

Improvement of solubility of phospholipase D from Streptomyces antibioticus in recombinant Escherichia coli and its application for the enzymatic synthesis of a non-natural plasmalogen

Riko Yamaguchi, Shamoli Akter, Aki Kanehama, Takahiro Iwamoto, Meme Hasegawa, Akeno Ito, Megumi Nishimukai, Miwa Yamada, Akiko Kashiwagi

Letters in Applied Microbiology ovad049 2023年04月

Construction of a mini-RNA replicon in Escherichia coli

Akiko Kashiwagi Tetsuya Yomo

Synthetic Biology 8 ( 1 ) 1 - 10 2023年03月

Host Selection-producing Variations in the Genome of Hop Stunt Viroid

Teruo Sano, Akiko Kashiwagi

Virus Research 311 198706 2022年04月

Lymphatic absorption of microbial plasmalogens in rats

2022年03月

Microbial diversity in the phyllosphere and rhizosphere of an apple orchard managed under prolonged “Natural Farming” practices

Ying-Hong He, Charith Raj Adkar-Purushothama, Tsutae Ito, Asuka Shirakawa, Hideki Yamamoto, Akiko Kashiwagi*, Ayumu Tatewaki, Misato Fujibayashi, Shuichi Sugiyama, Katsuhiko Yaginuma, Tomoya Akahira, Shingen Yamamoto, Seiya Tsushima, Yuko Matsushita and Teruo Sano

Microorganisms 9 ( 10 ) 2056 2021年09月

The single-stranded RNA bacteriophage Qβ adapts rapidly to high temperatures: an evolution experiment

Md. Tanvir Hossain, Toma Yokono and Akiko Kashiwagi

Viruses-Basel 12 ( 6 ) 638 2020年06月

Complete genomic sequence of Pseudomonas lactis bacteriophage HU1 isolated from raw cow's milk.

Tanaka C, Nakayama T, Toba T, Kashiwagi A

Archives of virology 165 ( 1 ) 215 - 217 2020年01月

フラスコの中で変異と選択を繰り返す実験進化:酵素の機能改変から生物進化の仮説検証まで

柏木明子

化学と生物 58 ( 4 ) 202 - 203 2020年

Influence of adaptive mutations, from thermal adaptation experiments, on the infection cycle of RNA bacteriophage Qβ.

Akiko Kashiwagi, Tamami Kadoya, Naoya Kumasaka, Tomofumi Kumagai, Fumie Sano Tsushima, Tetsuya Yomo

Archives of virology 163 ( 10 ) 2655 - 2662 2018年10月

A Lytic Bacteriophage for Controlling Pseudomonas lactis in Raw Cow's Milk.

Tanaka C, Yamada K, Takeuchi H, Inokuchi Y, Kashiwagi A, Toba T

Applied and environmental microbiology 84 ( 18 ) 2018年09月

Characterization of a single mutation in TraQ in a strain of Escherichia coli partially resistant to Qβ infection

Akiko Kashiwagi, Hikari Kitamura, Fumie Sano Tsushima

Frontiers in Microbiology 6 124 2015年02月

Contribution of silent mutations to thermal adaptation of RNA bacteriophage Qβ.

Kashiwagi A, Sugawara R, Sano Tsushima F, Kumagai T, Yomo T

Journal of virology 88 ( 19 ) 11459 - 68 2014年10月

Adaptation of a cyanobacterium to a biochemically rich environment in experimental evolution as an initial step toward a chloroplast-like state

Hosoda K, Habuchi M, Suzuki S, Miyazaki M, Takikawa G, Sakurai T, Kashiwagi A, Sueyoshi M, Matsumoto Y, Kiuchi A, Mori K, Yomo T.

PLoS ONE 9 ( 5 ) e98337 2014年05月

Quantitative comparison of the RNA bacteriophage Qβ life cycle in rich and minimal media

Tomonori Inomata, Hitomi Kimura, Haruki Hayasaka, Akinori Shiozaki, Yasuhiro Fujita, Akiko Kashiwagi

Archives of Virology 2012年07月

Ongoing phenotypic and genomic changes in experimental coevolution of RNA bacteriophage Qβ and Escherichia coli

Akiko Kashiwagi, Tetsuya Yomo

PLoS Genetics 7 ( 8 ) 2011年08月

Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli

Saburo Tsuru, Nao Yasuda, Yoshie Murakami, Junya Ushioda, Kotaro Mori, Akiko Kashiwagi, Shingo Suzuki, Bei-Wen Ying, Tetsuya Yomo

Molecular Systems Biology 7 2011年03月

Cooperative adaptation to establishment of a synthetic bacterial mutualism

Kazufumi Hosoda, Shingo Suzuki, Yoshinori Yamauchi, Yasunori Shiroguchi, Akiko Kashiwagi, Naoaki Ono, Kotaro Mori, Tetsuya Yomo

PLoS ONE 6 ( 2 ) 2011年02月

Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution

Toshihiko Kishimoto, Leo Iijima, Makoto Tatsumi, Naoaki Ono, Ayana Oyake, Tomomi Hashimoto, Moe Matsuo, Masato Okubo, Shingo Suzuki, Kotaro Mori, Akiko Kashiwagi, Chikara Furusawa, Bei-Wen Ying, Tetsuya Yomo

PLoS Genetics 6 ( 10 ) 2010年10月

Still alive(女性研究者のキャリアを考える)

柏木明子

生物工学会誌 : seibutsu-kogaku kaishi 88 ( 4 ) 184 - 185 2010年04月

弘前大学の生物工学会会員です(北日本支部,Branch Spirit)

柏木明子, 園木和典

生物工学会誌 : seibutsu-kogaku kaishi 88 ( 6 ) 2010年

Noisy cell growth rate leads to fluctuating protein concentration in bacteria.

Tsuru S, Ichinose J, Kashiwagi A, Ying BW, Kaneko K, Yomo T

Physical biology 6 ( 3 ) 036015 2009年06月

Evolution of carrying capacity in evolution experiments focusing on a single locus on the Escherichia coli chromosome

Kotaro Mori, Akiko Kashiwagi, Itaru Urabe and Tetsuya Yomo

BioSystems 95 ( 2 ) 114 - 119 2009年02月

Construction of Escherichia coli gene expression level perturbation collection.

Kashiwagi A, Sakurai T, Tsuru S, Ying BW, Mori K, Yomo T

Metabolic engineering 11 ( 1 ) 56 - 63 2009年01月

1P-241 2種の栄養要求性大腸菌からなる人工相利共生系において観察される協力的な適応的表現型可塑性(生態/環境,第47回日本生物物理学会年会)

Hosoda Kazufumi, Mori Kotaro, Kashiwagi Akiko, Suzuki Shingo, Yomo Tetsuya

生物物理 49 ( 0 ) 2009年

2P-143 栄養枯渇に対する適応応答における遺伝子発現の確率性(細胞生物的課題(接着,運動,骨格,伝達,膜),第47回日本生物物理学会年会)

Tsuru Saburo, Ying Bei-Wen, Mori Kotaro, Ushioda Junya, Kashiwagi Akiko, Yomo Tetsuya

生物物理 49 ( 0 ) 2009年

An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays.

Ono N, Suzuki S, Furusawa C, Agata T, Kashiwagi A, Shimizu H, Yomo T

Bioinformatics (Oxford, England) 24 ( 10 ) 1278 - 85 2008年05月

Phenotypic plasticity of Escherichia coli at initial stage of symbiosis with Dictyostelium discoideum.

Yamada A, Matsuyama S, Todoriki M, Kashiwagi A, Urabe I, Yomo T

Bio Systems 92 ( 1 ) 1 - 9 2008年04月

An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays

Naoki Ono, Shingo Suzuki, Chikara Furusawa, Tomoharu Agata, Akiko Kashiwagi, Hiroshi Shimizu and Tetsuya Yomo

Bioinformatics 24 ( 10 ) 1278 - 1285 2008年03月

3P-284 大腸菌と細胞性粘菌からなる共生コロニー目形成過程における大腸菌の詳細な遺伝子発現解析(生命の起源・進化,第46回日本生物物理学会年会)

Kihara Kumiko, Mori Kotaro, Ono Naoki, Suzuki Shingo, Kashiwagi Akiko, Furusawa Chikara, Yomo Tetsuya

生物物理 48 ( 0 ) 2008年

Analysis of fluctuation in protein abundance without promoter regulation based on Escherichia coli continuous culture.

Yamada T, Furusawa C, Nagahisa K, Kashiwagi A, Yomo T, Shimizu H

Bio Systems 90 ( 3 ) 614 - 22 2007年11月

Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays

Shingo Suzuki, Naoki Ono, Chikara Furusawa, Akiko Kashiwagi and Tetsuya Yomo

BMC Genomics 8 373 2007年10月

Insight into the sequence specificity of a probe on an Affymetrix GeneChip by titration experiments using only one oligonucleotide

Shingo Suzuki, Chikara Furusawa, Naoki Ono, Akiko Kashiwagi, Itaru Urabe and Tetsuya Yomo

BIOPHYSICS 3 47 - 56 2007年09月

Analysis of Fluctuation in Protein Abundance without Promoter Regulation based on Escherichia coli Continuous Culture

Tadashi Yamada, Chikara Furusawa, Keisuke Nagahisa, Akiko Kashiwagi, Tetsuya Yomo, and Hiroshi Shimizu

BioSystems 90 ( 3 ) 614 - 622 2007年02月

2E10-3 大腸菌内一遺伝子発現量可変株の構築(遺伝子工学・核酸工学,一般講演)

柏木明子, 櫻井崇弘, 森光太郎, 四方哲也

日本生物工学会大会講演要旨集 19 2007年

1P234 大腸菌と細胞性粘菌の実験室内共生系における大腸菌の遺伝子発現ダイナミクス解析(生命情報科学(機能ゲノミクス),ポスター発表,第45回日本生物物理学会年会)

木原久美子, 小野直亮, 鈴木真吾, 柏木明子, 古澤力, 四方哲也

生物物理 47 ( 0 ) 2007年

Adaptive Response of a Gene Network to Environmental Changes by Fitness-induced Attractor Selection

Akiko Kashiwagi, Itaru Urabe, Kunihiko Kaneko and Tetsuya Yomo

Plos ONE 1 ( 1 ) e49 - e49 2006年12月

Inherent Characteristics of Gene Expression for Buffering Environmental Changes

Takao Suzuki, Akiko Kashiwagi, Itaru Urabe and Tetsuya Yomo

BIOPHYSICS 2 63 - 70 2006年11月

Analysis of fluctuation in gene expression based on continuous culture system

Tadashi Yamada, Makoto Sadamitsu, Keisuke Nagahisa, Akiko Kashiwagi, Chikara Furusawa, Tetsuya Yomo, and Hiroshi Shimizu

Bio-ADIT 2006 113 - 127 2006年06月

Inherent characteristics of gene expression for buffering environmental changes without the corresponding transcriptional regulations.

Suzuki T, Kashiwagi A, Urabe I, Yomo T

Biophysics (Nagoya-shi, Japan) 2 63 - 70 2006年

Ubiquity of log-normal distributions in intra-cellular reaction dynamics

Chikara Furusawa, Takao Suzuki, Akiko Kashiwagi, Tetsuya Yomo and Kunihiko Kaneko

BIOPHYSICS 1 25 - 31 2005年04月

History dependent effects on phenotypic expression of a newly emerged gene.

Suzuki T, Kashiwagi A, Mori K, Urabe I, Yomo T

Bio Systems 77 ( 1-3 ) 137 - 41 2004年11月

Analysis of Cell Population Dynamics in Continuous Culture of Escherichia coli

Tadashi Yamada, Kouichi.Maeoka, Akiko Kashiwagi, Keisuke Nagahisa,

Proceeding of Asian Pacific Confederation of Chemical Engineering 3P ( 01 ) 087 2004年10月

Calcr, a brain-specific imprinted mouse calcitonin receptor gene in the imprinted cluster of the proximal region of chromosome 6.

Hoshiya H, Meguro M, Kashiwagi A, Okita C, Oshimura M

Journal of human genetics 48 ( 4 ) 208 - 11 2003年

Plasticity of fitness and diversification process during an experimental molecular evolution

Akiko Kashiwagi, Wataru Noumachi, Masato Katsuno, Mohammad. T. Alam, Itaru Urabe and Tetsuya Yomo

Journal of Molecular Evolution 52 ( 6 ) 502 - 509 2001年06月

How small can the difference among competitors be for coexistence to Occur

Akiko Kashiwagi, Tadashi Kanaya, Tetsuya Yomo, and Itaru Urabe

Researches on Population Ecology 40 ( 2 ) 223 - 226 1998年06月

Fate of a mutant emerging at the initial stage of evolution

Xu Wei.-Zhong., Akiko Kashiwagi, Tetsuya Yomo, and Itaru Urabe

Researches on Population Ecology 38 ( 2 ) 231 - 237 1996年06月

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論文 - 柏木　明子