論文 - 柏木 明子
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Revealing gene expression heterogeneity in a clonal population of Tetrahymena thermophila through Single-Cell RNA Sequencing
Hiroki Kojima, Akiko Kashiwagi, Takashi Ikegami
Biochemistry and Biophysics Reports vol.38 ( 101720 ) 2024年04月
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Comparative genomic and functional analysis of two Escherichia coli L-form strains reveals the dispensability of multiple essential genes
Yunfei Liu; Chen Kang; Yueyue Zhang; Di Tian; Hui Lu; Boying Xu; Yang Xia; Akiko Kashiwagi; Martin Westermann; Christian Hoischen; Jian Xu; Tetsuya Yomo
Bioscience Reports 43 BSR20231227 2023年10月
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Improvement of solubility of phospholipase D from Streptomyces antibioticus in recombinant Escherichia coli and its application for the enzymatic synthesis of a non-natural plasmalogen
Riko Yamaguchi, Shamoli Akter, Aki Kanehama, Takahiro Iwamoto, Meme Hasegawa, Akeno Ito, Megumi Nishimukai, Miwa Yamada, Akiko Kashiwagi
Letters in Applied Microbiology ovad049 2023年04月
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Construction of a mini-RNA replicon in Escherichia coli
Akiko Kashiwagi Tetsuya Yomo
Synthetic Biology 8 ( 1 ) 1 - 10 2023年03月
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Host Selection-producing Variations in the Genome of Hop Stunt Viroid
Teruo Sano, Akiko Kashiwagi
Virus Research 311 198706 2022年04月
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Lymphatic absorption of microbial plasmalogens in rats
2022年03月
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Microbial diversity in the phyllosphere and rhizosphere of an apple orchard managed under prolonged “Natural Farming” practices
Ying-Hong He, Charith Raj Adkar-Purushothama, Tsutae Ito, Asuka Shirakawa, Hideki Yamamoto, Akiko Kashiwagi*, Ayumu Tatewaki, Misato Fujibayashi, Shuichi Sugiyama, Katsuhiko Yaginuma, Tomoya Akahira, Shingen Yamamoto, Seiya Tsushima, Yuko Matsushita and Teruo Sano
Microorganisms 9 ( 10 ) 2056 2021年09月
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The single-stranded RNA bacteriophage Qβ adapts rapidly to high temperatures: an evolution experiment
Md. Tanvir Hossain, Toma Yokono and Akiko Kashiwagi
Viruses-Basel 12 ( 6 ) 638 2020年06月
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Complete genomic sequence of Pseudomonas lactis bacteriophage HU1 isolated from raw cow's milk.
Tanaka C, Nakayama T, Toba T, Kashiwagi A
Archives of virology 165 ( 1 ) 215 - 217 2020年01月
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フラスコの中で変異と選択を繰り返す実験進化:酵素の機能改変から生物進化の仮説検証まで
柏木 明子
化学と生物 58 ( 4 ) 202 - 203 2020年
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Influence of adaptive mutations, from thermal adaptation experiments, on the infection cycle of RNA bacteriophage Qβ.
Akiko Kashiwagi, Tamami Kadoya, Naoya Kumasaka, Tomofumi Kumagai, Fumie Sano Tsushima, Tetsuya Yomo
Archives of virology 163 ( 10 ) 2655 - 2662 2018年10月
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A Lytic Bacteriophage for Controlling Pseudomonas lactis in Raw Cow's Milk.
Tanaka C, Yamada K, Takeuchi H, Inokuchi Y, Kashiwagi A, Toba T
Applied and environmental microbiology 84 ( 18 ) 2018年09月
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Characterization of a single mutation in TraQ in a strain of Escherichia coli partially resistant to Qβ infection
Akiko Kashiwagi, Hikari Kitamura, Fumie Sano Tsushima
Frontiers in Microbiology 6 124 2015年02月
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Contribution of silent mutations to thermal adaptation of RNA bacteriophage Qβ.
Kashiwagi A, Sugawara R, Sano Tsushima F, Kumagai T, Yomo T
Journal of virology 88 ( 19 ) 11459 - 68 2014年10月
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Adaptation of a cyanobacterium to a biochemically rich environment in experimental evolution as an initial step toward a chloroplast-like state
Hosoda K, Habuchi M, Suzuki S, Miyazaki M, Takikawa G, Sakurai T, Kashiwagi A, Sueyoshi M, Matsumoto Y, Kiuchi A, Mori K, Yomo T.
PLoS ONE 9 ( 5 ) e98337 2014年05月
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Quantitative comparison of the RNA bacteriophage Qβ life cycle in rich and minimal media
Tomonori Inomata, Hitomi Kimura, Haruki Hayasaka, Akinori Shiozaki, Yasuhiro Fujita, Akiko Kashiwagi
Archives of Virology 2012年07月
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Ongoing phenotypic and genomic changes in experimental coevolution of RNA bacteriophage Qβ and Escherichia coli
Akiko Kashiwagi, Tetsuya Yomo
PLoS Genetics 7 ( 8 ) 2011年08月
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Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli
Saburo Tsuru, Nao Yasuda, Yoshie Murakami, Junya Ushioda, Kotaro Mori, Akiko Kashiwagi, Shingo Suzuki, Bei-Wen Ying, Tetsuya Yomo
Molecular Systems Biology 7 2011年03月
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Cooperative adaptation to establishment of a synthetic bacterial mutualism
Kazufumi Hosoda, Shingo Suzuki, Yoshinori Yamauchi, Yasunori Shiroguchi, Akiko Kashiwagi, Naoaki Ono, Kotaro Mori, Tetsuya Yomo
PLoS ONE 6 ( 2 ) 2011年02月
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Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution
Toshihiko Kishimoto, Leo Iijima, Makoto Tatsumi, Naoaki Ono, Ayana Oyake, Tomomi Hashimoto, Moe Matsuo, Masato Okubo, Shingo Suzuki, Kotaro Mori, Akiko Kashiwagi, Chikara Furusawa, Bei-Wen Ying, Tetsuya Yomo
PLoS Genetics 6 ( 10 ) 2010年10月
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Still alive(女性研究者のキャリアを考える)
柏木 明子
生物工学会誌 : seibutsu-kogaku kaishi 88 ( 4 ) 184 - 185 2010年04月
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弘前大学の生物工学会会員です(北日本支部,Branch Spirit)
柏木 明子, 園木 和典
生物工学会誌 : seibutsu-kogaku kaishi 88 ( 6 ) 2010年
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Noisy cell growth rate leads to fluctuating protein concentration in bacteria.
Tsuru S, Ichinose J, Kashiwagi A, Ying BW, Kaneko K, Yomo T
Physical biology 6 ( 3 ) 036015 2009年06月
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Evolution of carrying capacity in evolution experiments focusing on a single locus on the Escherichia coli chromosome
Kotaro Mori, Akiko Kashiwagi, Itaru Urabe and Tetsuya Yomo
BioSystems 95 ( 2 ) 114 - 119 2009年02月
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Construction of Escherichia coli gene expression level perturbation collection.
Kashiwagi A, Sakurai T, Tsuru S, Ying BW, Mori K, Yomo T
Metabolic engineering 11 ( 1 ) 56 - 63 2009年01月
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1P-241 2種の栄養要求性大腸菌からなる人工相利共生系において観察される協力的な適応的表現型可塑性(生態/環境,第47回日本生物物理学会年会)
Hosoda Kazufumi, Mori Kotaro, Kashiwagi Akiko, Suzuki Shingo, Yomo Tetsuya
生物物理 49 ( 0 ) 2009年
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2P-143 栄養枯渇に対する適応応答における遺伝子発現の確率性(細胞生物的課題(接着,運動,骨格,伝達,膜),第47回日本生物物理学会年会)
Tsuru Saburo, Ying Bei-Wen, Mori Kotaro, Ushioda Junya, Kashiwagi Akiko, Yomo Tetsuya
生物物理 49 ( 0 ) 2009年
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An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays.
Ono N, Suzuki S, Furusawa C, Agata T, Kashiwagi A, Shimizu H, Yomo T
Bioinformatics (Oxford, England) 24 ( 10 ) 1278 - 85 2008年05月
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Phenotypic plasticity of Escherichia coli at initial stage of symbiosis with Dictyostelium discoideum.
Yamada A, Matsuyama S, Todoriki M, Kashiwagi A, Urabe I, Yomo T
Bio Systems 92 ( 1 ) 1 - 9 2008年04月
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An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays
Naoki Ono, Shingo Suzuki, Chikara Furusawa, Tomoharu Agata, Akiko Kashiwagi, Hiroshi Shimizu and Tetsuya Yomo
Bioinformatics 24 ( 10 ) 1278 - 1285 2008年03月
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3P-284 大腸菌と細胞性粘菌からなる共生コロニー目形成過程における大腸菌の詳細な遺伝子発現解析(生命の起源・進化,第46回日本生物物理学会年会)
Kihara Kumiko, Mori Kotaro, Ono Naoki, Suzuki Shingo, Kashiwagi Akiko, Furusawa Chikara, Yomo Tetsuya
生物物理 48 ( 0 ) 2008年
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Analysis of fluctuation in protein abundance without promoter regulation based on Escherichia coli continuous culture.
Yamada T, Furusawa C, Nagahisa K, Kashiwagi A, Yomo T, Shimizu H
Bio Systems 90 ( 3 ) 614 - 22 2007年11月
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Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays
Shingo Suzuki, Naoki Ono, Chikara Furusawa, Akiko Kashiwagi and Tetsuya Yomo
BMC Genomics 8 373 2007年10月
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Insight into the sequence specificity of a probe on an Affymetrix GeneChip by titration experiments using only one oligonucleotide
Shingo Suzuki, Chikara Furusawa, Naoki Ono, Akiko Kashiwagi, Itaru Urabe and Tetsuya Yomo
BIOPHYSICS 3 47 - 56 2007年09月
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Analysis of Fluctuation in Protein Abundance without Promoter Regulation based on Escherichia coli Continuous Culture
Tadashi Yamada, Chikara Furusawa, Keisuke Nagahisa, Akiko Kashiwagi, Tetsuya Yomo, and Hiroshi Shimizu
BioSystems 90 ( 3 ) 614 - 622 2007年02月
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2E10-3 大腸菌内一遺伝子発現量可変株の構築(遺伝子工学・核酸工学,一般講演)
柏木 明子, 櫻井 崇弘, 森 光太郎, 四方 哲也
日本生物工学会大会講演要旨集 19 2007年
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1P234 大腸菌と細胞性粘菌の実験室内共生系における大腸菌の遺伝子発現ダイナミクス解析(生命情報科学(機能ゲノミクス),ポスター発表,第45回日本生物物理学会年会)
木原 久美子, 小野 直亮, 鈴木 真吾, 柏木 明子, 古澤 力, 四方 哲也
生物物理 47 ( 0 ) 2007年
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Adaptive Response of a Gene Network to Environmental Changes by Fitness-induced Attractor Selection
Akiko Kashiwagi, Itaru Urabe, Kunihiko Kaneko and Tetsuya Yomo
Plos ONE 1 ( 1 ) e49 - e49 2006年12月
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Inherent Characteristics of Gene Expression for Buffering Environmental Changes
Takao Suzuki, Akiko Kashiwagi, Itaru Urabe and Tetsuya Yomo
BIOPHYSICS 2 63 - 70 2006年11月
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Analysis of fluctuation in gene expression based on continuous culture system
Tadashi Yamada, Makoto Sadamitsu, Keisuke Nagahisa, Akiko Kashiwagi, Chikara Furusawa, Tetsuya Yomo, and Hiroshi Shimizu
Bio-ADIT 2006 113 - 127 2006年06月
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Inherent characteristics of gene expression for buffering environmental changes without the corresponding transcriptional regulations.
Suzuki T, Kashiwagi A, Urabe I, Yomo T
Biophysics (Nagoya-shi, Japan) 2 63 - 70 2006年
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Ubiquity of log-normal distributions in intra-cellular reaction dynamics
Chikara Furusawa, Takao Suzuki, Akiko Kashiwagi, Tetsuya Yomo and Kunihiko Kaneko
BIOPHYSICS 1 25 - 31 2005年04月
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History dependent effects on phenotypic expression of a newly emerged gene.
Suzuki T, Kashiwagi A, Mori K, Urabe I, Yomo T
Bio Systems 77 ( 1-3 ) 137 - 41 2004年11月
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Analysis of Cell Population Dynamics in Continuous Culture of Escherichia coli
Tadashi Yamada, Kouichi.Maeoka, Akiko Kashiwagi, Keisuke Nagahisa,
Proceeding of Asian Pacific Confederation of Chemical Engineering 3P ( 01 ) 087 2004年10月
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Calcr, a brain-specific imprinted mouse calcitonin receptor gene in the imprinted cluster of the proximal region of chromosome 6.
Hoshiya H, Meguro M, Kashiwagi A, Okita C, Oshimura M
Journal of human genetics 48 ( 4 ) 208 - 11 2003年
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Plasticity of fitness and diversification process during an experimental molecular evolution
Akiko Kashiwagi, Wataru Noumachi, Masato Katsuno, Mohammad. T. Alam, Itaru Urabe and Tetsuya Yomo
Journal of Molecular Evolution 52 ( 6 ) 502 - 509 2001年06月
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How small can the difference among competitors be for coexistence to Occur
Akiko Kashiwagi, Tadashi Kanaya, Tetsuya Yomo, and Itaru Urabe
Researches on Population Ecology 40 ( 2 ) 223 - 226 1998年06月
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Fate of a mutant emerging at the initial stage of evolution
Xu Wei.-Zhong., Akiko Kashiwagi, Tetsuya Yomo, and Itaru Urabe
Researches on Population Ecology 38 ( 2 ) 231 - 237 1996年06月