Updated on 2024/03/28

写真a

 
USHIDA CHISATO
 
Affiliation
Faculty of Agriculture and Life Science Department of Biochemistry and Molecular Biology

Degree

  • 博士(理学)

  • 理学修士

Research Interests

  • 分子生物学

  • Molecular Biology

Research Areas

  • Life Science / Molecular biology

Professional Memberships

  • Frontiers in Non-coding RNA

  • 日本RNA学会

  • 日本分子生物学会

  • 日本RNA学会

  • 日本マイコプラズマ学会

  • 日本分子生物学会

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Papers

  • A leaderless mRNA including tRNA-like sequence encodes a small peptide that regulates the expression of GcvB small RNA in Escherichia coli

    Akira Muto, Simon Goto, Daisuke Kurita, Chisato Ushida, Akiko Soma, Hyota Himeno

    Journal of Biochemistry   2022.1

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  • Identification of a short form of a Caenorhabditis elegans Y RNA homolog Cel7 RNA.

    Chiba T, Kihara SY, Sato M, Xingkui K, Goto S, Suzumura T, Kawai G, Himeno H, Ushida C

    Biochemical and biophysical research communications   557   104 - 109   2021.6

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    PubMed

  • Involvement of GcvB small RNA in intrinsic resistance to multiple aminoglycoside antibiotics in Escherichia coli.

    Muto A, Goto S, Kurita D, Ushida C, Himeno H

    Journal of biochemistry   169 ( 4 )   485 - 489   2021.4

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    PubMed

  • Methiin as a nematode attractant in Allium sativum

    Noboru Takada, Sayaka Sutoh, Masuru Toyota, Yoshihisa Yamazaki, Nozomi Kitano-Yamashita, Chisato Ushida, Kazuo Yamashita

    Canadian Journal of Chemistry   98 ( 3 )   164 - 168   2020.1

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  • Nuclear localization of a C. elegans CCCH-type zinc finger protein encoded by T26A8.4

    Takashi Koyama, Chisato Ushida

    microPublication Biology   2018   2018.9

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    PubMed

  • (p)ppGpp-dependent and -independent pathways for salt tolerance in Escherichia coli.

    Tarusawa T, Ito S, Goto S, Ushida C, Muto A, Himeno H

    Journal of biochemistry   160 ( 1 )   19 - 26   2016.7

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    PubMed

  • Sequence and structure analysis of a mirror tRNA located upstream of the cytochrome oxidase I mRNA in mouse mitochondria.

    Saya Okui, Chisato Ushida, Hidenori Kiyosawa, Gota Kawai

    Journal of Biochemistry   159 ( 3 )   341 - 350   2016.3

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  • Sequence and structure analysis of a mirror tRNA located upstream of the cytochrome oxidase I mRNA in mouse mitochondria.

    Okui S, Ushida C, Kiyosawa H, Kawai G

    Journal of biochemistry   159 ( 3 )   341 - 50   2016.3

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    PubMed

  • (p)ppGpp-dependent and -independent pathways for salt tolerance in Escherichia coli.

    Takefusa Tarusawa, Shion Ito, Simon Goto, Chisato Ushida, Akira Muto, Hyouta Himeno

    Journal of Biochemistry   2016.1

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  • Secondary structure-based analysis of mouse brain small RNA sequences obtained by using next-generation sequencing.

    Hidenori Kiyosawa, Akio Okumura, Saya Okui, Chisato Ushida, Gota Kawai

    Genomics   106 ( 2 )   122 - 128   2015.8

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  • Secondary structure-based analysis of mouse brain small RNA sequences obtained by using next-generation sequencing.

    Kiyosawa H, Okumura A, Okui S, Ushida C, Kawai G

    Genomics   106 ( 2 )   122 - 8   2015.8

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    PubMed

  • Functional genomics of small structured ncRNAs

    ( 41 )   15 - 18   2014.12

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  • small structured ncRNAの機能ゲノミクス

    牛田 千里

    日本マイコプラズマ学会雑誌   41   15 - 18   2014

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    CiNii Research

  • A model of the intracellular response of an olfactory neuron in Caenorhabditis elegans to odor stimulation.

    7   e42907   2012.8

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  • A model of the intracellular response of an olfactory neuron in Caenorhabditis elegans to odor stimulation.

    Usuyama M, Ushida C, Shingai R

    PloS one   7 ( 8 )   e42907   2012

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  • 特集 細胞核-構造と機能 4.核小体 Small subunit processome

    牛田 千里, 藤原 俊伸

    生体の科学   62 ( 5 )   418 - 419   2011.10

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    CiNii Research

  • 特集 細胞核-構造と機能 4.核小体 核小体タンパク質フィブリラリン

    牛田 千里, 藤原 俊伸

    生体の科学   62 ( 5 )   420 - 421   2011.10

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    CiNii Research

  • A small nucleolar RNA functions in rRNA processing in C. elegans.

    Hokii, Y., Sasano, Y., Sato, M., Sakamoto, H., Sakata, K., Shingai, R., Taneda, A., Oka, S., Himeno, H., Muto, A., Fujiwara, T., Ushida, C.

    Nucleic Acids Research   38 ( 17 )   5909 - 5918   2010.9

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  • A small nucleolar RNA functions in rRNA processing in Caenorhabditis elegans.

    Hokii Y, Sasano Y, Sato M, Sakamoto H, Sakata K, Shingai R, Taneda A, Oka S, Himeno H, Muto A, Fujiwara T, Ushida C

    Nucleic acids research   38 ( 17 )   5909 - 18   2010.9

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  • Trans-Translation is Involved in the CcpA-Dependent Tagging and Degradation of TreP in Bacillus subtilis

    UJIIE Hiromi, MATSUTANI Tomoko, TOMATSU Hisashi, FUJIHARA Ai, USHIDA Chisato, MIWA Yasuhiko, FUJITA Yasutaro, HIMENO Hyouta, MUTO Akira

    Journal of Biochemistry   145 ( 1 )   59 - 66   2009.1

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  • Trans-translation is involved in the CcpA-dependent tagging and degradation of TreP in Bacillus subutilis.

    Ujiie, H., Matsutani, T., Tomatsu, H., Fujihara, A., Ushida, C., Miwa, Y., Fujita, Y., Himeno, H., Muto, A.

    Journal of Biochemistry   45   59 - 66   2009.1

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  • Trans-translation is involved in the CcpA-dependent tagging and degradation of TreP in Bacillus subtilis.

    Ujiie H, Matsutani T, Tomatsu H, Fujihara A, Ushida C, Miwa Y, Fujita Y, Himeno H, Muto A

    Journal of biochemistry   145 ( 1 )   59 - 66   2009.1

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  • tmRNA-dependent trans-translation is required for sporulation in Bacillus subtilis.

    Abe, T., Sakaki, K., Fujihara, A., Ujiie, H., Ushida, C., Himeno, H., Sato, T., Muto, A.

    Molecular Microbiology   69   1491 - 1498   2008.9

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  • tmRNA-dependent trans-translation is required for sporulation in Bacillus subtilis.

    Abe T, Sakaki K, Fujihara A, Ujiie H, Ushida C, Himeno H, Sato T, Muto A

    Molecular microbiology   69 ( 6 )   1491 - 8   2008.9

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  • Distribution of U3 small nucleolar RNA and fibrillarin during early embryogenesis in Caenorhabditis elegans.

    Sasano, Y., Hokii, Y., Inoue, K., Sakamoto, H., Ushida, C., Fujiwara, T.

    Biochimie   90   898 - 907   2008.6

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  • Distribution of U3 small nucleolar RNA and fibrillarin during early embryogenesis in Caenorhabditis elegans.

    Sasano Y, Hokii Y, Inoue K, Sakamoto H, Ushida C, Fujiwara T

    Biochimie   90 ( 6 )   898 - 907   2008.6

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  • Twelve novel C. elegans RNA candidates isolated by two-dimensional polyacrylamide gel electrophoresis.

    Hokii Y, Kubo A, Ogasawara T, Nogi Y, Taneda A, Arai R, Muto A, Ushida C

    Gene   365   83 - 7   2006.1

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  • Twelve novel C. elegans RNA candidates isolated by two-dimensional polyacrylamide gel electrophoresis.(共著)

    Hokii, Y., Kubo, A., Ogasawara, T., Nogi, Y., Taneda, A., Arai, R., Muto, A., Ushida, C.

    Gene   365   83 - 87   2006.1

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  • Twelve novel C. elegans RNA candidates isolated by two-dimensional polyacrylamide gel electrophoresis

    牛田 千里

    Gene 365   83 - 87   2005

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  • A novel GTPase activated by the small subunit of ribosome.(共著)

    Himeno, H., Hanawa-Suetsugu, K., Kimura, T., Takagi, K., Sugiyama, W., Shirata, S., Mikami, T., Odagiri, F., Osanai, Y., Watanabe, D., Goto, S., Kalachnyuk, L., Ushida, C., Muto, A.

    Nucleic Acids Research   32   5303 - 5309   2004.10

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  • Isolation of eight novel Caenorhabditis elegans small RNAs.(共著)

    Wachi, M., Ogawa, T., Yokoyama, K., Hokii, Y., Shimoyama, M., Muto, A., Ushida, C.

    Gene   335   47 - 56   2004.3

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  • 線虫の非翻訳RNA

    牛田 千里

    細胞工学 23巻10号   1186 - 1192   2004

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    CiNii Research

  • Mapping of MCS4 RNA genes in M. capricolum subsp. capricolum strains California kid and GM262G. "jointly worked"

    Ushida, C., Miyata, M., Siugzdaite, J., Muto, A.

    Japanese Journal of Mycoplasmology   ( 30 )   36 - 37   2003.10

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    Language:Japanese   Publishing type:Research paper (other academic)   Kind of work:Joint Work  

  • Mapping of the MCS4 RNA genes in the genomes of Mycoplasma capricolum subsp. capricolum strains California kid and GM 262 G

    USHIDA Chisato, MIYATA Makoto, SIUGZDAITE Jurate, MUTO Akira

    30   36 - 37   2003.10

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  • Distribution of the MCS4 RNA genes in mycoplasmas belonging to the Mycoplasma mycoides cluster.

    Ushida C, Yoshida A, Miyakawa Y, Ara Y, Muto A

    Gene   314   149 - 55   2003.9

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  • Distribution of the MCS4 RNA genes in mycoplasmas belonging to the Mycoplasma mycoides cluster. (共著)

    Ushida, C., Yoshida, A., Miyakawa, Y., Ara, Y., Muto, A.

    Gene   314   149 - 155   2003.5

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  • Central region of the human splicing factor Hprp3p interacts with Hprp4p.

    Gonzalez-Santos JM, Wang A, Jones J, Ushida C, Liu J, Hu J

    The Journal of biological chemistry   277 ( 26 )   23764 - 72   2002.6

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  • Asparaginyl-tRNA synthetase activity of Mycoplasma capricolum MCS4 RNA binding element 2 (MCS4BE2)

    YOKOYAMA K., SASAKI T., ANDO K., MATSUDA T., USHIDA C., MUTO A.

    27   70 - 71   2000.12

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  • Species specificity and binding protein of Mycoplasma capricolum MCS4 RNA

    USHIDA Senri, ANDO Kouhei, MATSUDA Takashi, MUTOU Akira

    Japanese journal of mycoplasmology   26   15 - 17   1999.12

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  • Specific binding proteins of M. capricolum MCS4 RNA

    ANDO K., MATUDA T., USHIDA C., MUTO A.

    25   88 - 90   1998.12

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  • Small stable RNAs of Mycoplasma capricolum

    USHIDA Chisato, SASAKI Tetsuharu, ANDO Kouhei, MATSUDA Takayoshi, MUTO Akira

    24   18 - 21   1997.12

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  • Probing the Secondary Structure of MCS4 RNA of Mycoplasma capricolun

    USHIDA Chisato, SASAMURA Shinpei, MUTO Akira

    The Journal of Biochemistry   122 ( 6 )   1202 - 1207   1997.12

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  • Probing the Secondary Structure of MCS4 RNA of Mycoplasma capricolm.

    Ushida Chisato, Sasamura Shinpei, Muto Akira

    J Biochem (Tokyo)   122 ( 6 )   1202 - 1207   1997

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  • Small stable RNAs in Mycoplasma capricolum

    USHIDA CHISATO, SASAKI TETSUHARU, ISHII KAZUYOSHI, UENO AKIO, NISHIDA TAKAKO, MUTO AKIRA

    23   78 - 81   1996.12

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  • 10Sa RNAリボソームの相互作用

    只木 敏雅, 姫野 俵太, 福島 雅昭, 佐藤 正和, 牛田 千里, 武藤 〓

    日本分子生物学会年会プログラム・講演要旨集   19   473   1996.8

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  • 枯草菌10Sa RNA機能の遺伝的解析

    松野 潤, 葛西 七重, 西田 貴子, 牛田 千里, 姫野 俵太, 武藤 〓

    日本分子生物学会年会プログラム・講演要旨集   19   473   1996.8

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  • mRNAとtRNAの機能を持つRNA(10Sa RNA)について

    佐藤 正和, 姫野 俵太, 只木 敏雅, 福島 雅昭, 牛田 千里, 武藤 〓

    日本分子生物学会年会プログラム・講演要旨集   19   472   1996.8

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  • Small stable RNAs of Mycoplasma capricolum

    USHIDA Chisato, MUTO Akira

    21   13 - 14   1995.10

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Books

  • 「ノンコーディングRNA:RNA分子の全体像を俯瞰する」その他の安定低分子ncRNA

    廣瀬哲郎,泊幸秀 編,牛田千里 他著( Role: Joint editor)

    化学同人  2016.6 

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    Language:Japanese Book type:Scholarly book

  • The molecular biology of non-coding RNA

    ( Role: Joint author)

    2010.12 

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    Language:Japanese Book type:Textbook, survey, introduction

  • Isolation and characterization of small RNAs in Caenorhabditis elegans (jointly worked)

    Chisato Ushida, Yusuke Hokii( Role: Joint author)

    CRC Press  2009.5 

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    Language:English Book type:Scholarly book

  • Diversity of RNA functions in C. elegans (in Functional non-coding RNAs)

    Ushida, C. (Kawai, G., Kanai, A., ed.)( Role: Joint editor)

    Kuba Pro.  2006.4 

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    Language:Japanese Book type:Scholarly book

Review Papers

  • ポリコーム群

    牛田千里

    生化学   87 ( 4 )   489 - 489   2015

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    Language:Japanese   Kind of work:Single Work  

  • 長鎖ノンコーディングRNA

    牛田千里

    生化学   87 ( 4 )   489 - 489   2015

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    Language:Japanese   Kind of work:Single Work  

  • Small subunit processome

    牛田千里,藤原俊伸

    生体の科学   62 ( 5 )   418 - 419   2011.10

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    Language:Japanese   Publishing type:Article, review, commentary, editorial, etc. (scientific journal)   Publisher:医学書院   Kind of work:Joint Work  

  • 核小体タンパク質フィブリラリン

    牛田千里,藤原俊伸

    生体の科学   62 ( 5 )   420 - 421   2011.10

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    Language:Japanese   Publishing type:Article, review, commentary, editorial, etc. (scientific journal)   Publisher:医学書院   Kind of work:Single Work  

  • RNAi

    牛田千里

    分子精神医学   10 ( 2 )   53 - 54   2010.4

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    Language:Japanese   Publishing type:Article, review, commentary, editorial, etc. (scientific journal)   Publisher:先端医学社   Kind of work:Single Work  

  • The discovery of RNAi

    Ushida, C.

    Heredity, Biological Science   61 ( 1 )   4 - 5   2007.1

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    Language:Japanese   Publishing type:Article, review, commentary, editorial, etc. (trade magazine, newspaper, online media)   Publisher:N. T. S   Kind of work:Single Work  

  • C. elegans noncoding RNA

    Cell technology   23 ( 10 )   1186 - 1192   2004.10

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    Language:Japanese   Publishing type:Article, review, commentary, editorial, etc. (trade magazine, newspaper, online media)   Publisher:Shujunsha   Kind of work:Single Work  

  • Isolation of eight novel Caenorhabditis elegans small RNAs

    M Wachi, T Ogawa, K Yokoyama, Y Hokii, M Shimoyama, A Muto, C Ushida

    GENE   335   47 - 56   2004.6

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    Language:English   Publishing type:Rapid communication, short report, research note, etc. (scientific journal)   Publisher:ELSEVIER SCIENCE BV   Kind of work:Joint Work  

    Web of Science

  • A novel GTPase activated by the small subunit of ribosome

    H Himeno, K Hanawa-Suetsugu, T Kimura, K Takagi, W Sugiyama, S Shirata, T Mikami, F Odagiri, Y Osanai, D Watanabe, S Goto, L Kalachnyuk, C Ushida, A Muto

    NUCLEIC ACIDS RESEARCH   32 ( 17 )   5303 - 5309   2004

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    Language:English   Publishing type:Rapid communication, short report, research note, etc. (scientific journal)   Publisher:OXFORD UNIV PRESS   Kind of work:Joint Work  

    Web of Science

    PubMed

  • Distribution of the MCS4 RNA genes in mycoplasmas belonging to the Mycoplasma mycoides cluster

    C Ushida, A Yoshida, Y Miyakawa, Y Ara, A Muto

    GENE   314   149 - 155   2003.9

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    Language:English   Publishing type:Rapid communication, short report, research note, etc. (scientific journal)   Publisher:ELSEVIER SCIENCE BV   Kind of work:Joint Work  

    Web of Science

  • Distribution of the MCS4 RNA genes in mycoplasmas belonging to the Mycoplasma mycoides cluster

    C Ushida, A Yoshida, Y Miyakawa, Y Ara, A Muto

    GENE   314   149 - 155   2003.9

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    Web of Science

  • Big world of small RNAs

    Ushida, C.

    1 ( 2 )   26 - 29   2003.1

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    Language:Japanese   Publishing type:Article, review, commentary, editorial, etc. (other)   Kind of work:Single Work  

  • Central region of the human splicing factor Hprp3p interacts with Hprp4p

    JM Gonzalez-Santos, A Wang, J Jones, C Ushida, J Liu, J Hu

    JOURNAL OF BIOLOGICAL CHEMISTRY   277 ( 26 )   23764 - 23772   2002.6

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    Language:English   Publishing type:Rapid communication, short report, research note, etc. (scientific journal)   Publisher:AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC   Kind of work:Joint Work  

    Web of Science

  • Detection of tmRNA-mediated froms-translation products in Bacillus subtilis

    Genes to Cells   7(3), 343-350 ( 3 )   343 - 50   2002

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    PubMed

  • Requirement of transfer-messenger RNA for the growth of Bacillus subtilis under stresses

    A Muto, A Fujihara, K Ito, J Matsuno, C Ushida, H Himeno

    GENES TO CELLS   5 ( 8 )   627 - 635   2000.8

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    Language:English   Publishing type:Rapid communication, short report, research note, etc. (scientific journal)   Publisher:BLACKWELL SCIENCE LTD   Kind of work:Joint Work  

    Web of Science

    PubMed

  • Requirement of transfer-messenger RNA for the growth of Bacillus subtilis under stresses

    A Muto, A Fujihara, K Ito, J Matsuno, C Ushida, H Himeno

    GENES TO CELLS   5 ( 8 )   627 - 635   2000.8

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    Language:English   Publishing type:Rapid communication, short report, research note, etc. (scientific journal)   Publisher:BLACKWELL SCIENCE LTD   Kind of work:Joint Work  

    Web of Science

    PubMed

  • A bacterial RNA that functions as both a tRNA and an mRNA

    A Muto, C Ushida, H Himeno

    TRENDS IN BIOCHEMICAL SCIENCES   23 ( 1 )   25 - 29   1998.1

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    Language:English   Publishing type:Book review, literature introduction, etc.   Publisher:ELSEVIER SCI LTD   Kind of work:Joint Work  

    Web of Science

    PubMed

  • Probing the secondary structure of MCS4 RNA of Mycoplasma capricolum

    C Ushida, S Sasamura, A Muto

    JOURNAL OF BIOCHEMISTRY   122 ( 6 )   1202 - 1207   1997.12

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    Language:English   Publishing type:Rapid communication, short report, research note, etc. (scientific journal)   Publisher:JAPANESE BIOCHEMICAL SOC   Kind of work:Joint Work  

    Web of Science

  • In vitro trans translation mediated by alanine-charged 10Sa RNA

    H Himeno, M Sato, T Tadaki, M Fukushima, C Ushida, A Muto

    JOURNAL OF MOLECULAR BIOLOGY   268 ( 5 )   803 - 808   1997.5

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    Language:English   Publishing type:Rapid communication, short report, research note, etc. (scientific journal)   Publisher:ACADEMIC PRESS LTD   Kind of work:Joint Work  

    Web of Science

    PubMed

  • Interaction of 10Sa RNA with ribosomes in Escherichia coli

    T Tadaki, M Fukushima, C Ushida, H Himeno, A Muto

    FEBS LETTERS   399 ( 3 )   223 - 226   1996.12

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    Language:English   Publishing type:Rapid communication, short report, research note, etc. (scientific journal)   Publisher:ELSEVIER SCIENCE BV   Kind of work:Joint Work  

    Web of Science

    PubMed

  • Novel small stable RNAs of Mycoplasma capricolum

    Chisato Ushida, Akira Muto

    DNA Research   2 ( 5 )   229 - 230   1995

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    Language:English   Publishing type:Rapid communication, short report, research note, etc. (scientific journal)   Publisher:Universal Academy Press Inc.   Kind of work:Joint Work  

    Scopus

    PubMed

  • Helical phase dependent action of CRP: Effect of the distance between the CRP site and the -35 region on promoter activity

    C. Ushida, H. Aiba

    Nucleic Acids Research   18 ( 21 )   6325 - 6330   1990.11

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    Language:English   Publishing type:Rapid communication, short report, research note, etc. (scientific journal)   Kind of work:Joint Work  

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Awards

  • Lewis Deans Award

    1998.07

Social Activities

  • ひろだいナビゲートキャラバンin青森北高校

    2016.09

  • 出前講義

    2006.06