論文 - 玉田 嘉紀
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Dynamic changes in gene-to-gene regulatory networks in response to SARS-CoV-2 infection.
Tanaka Y, Higashihara K, Nakazawa MA, Yamashita F, Tamada Y, Okuno Y
Scientific reports 11 ( 1 ) 11241 - 11241 2021年05月
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Classification of glomerular pathological findings using deep learning and nephrologist-AI collective intelligence approach.
Uchino E, Suzuki K, Sato N, Kojima R, Tamada Y, Hiragi S, Yokoi H, Yugami N, Minamiguchi S, Haga H, Yanagita M, Okuno Y
International journal of medical informatics 141 104231 - 104231 2020年09月
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Variant analysis of prostate cancer in Japanese patients and a new attempt to predict related biological pathways.
Kasajima R, Yamaguchi R, Shimizu E, Tamada Y, Niida A, Tremmel G, Kishida T, Aoki I, Imoto S, Miyano S, Uemura H, Miyagi Y
Oncology reports 43 ( 3 ) 943 - 952 2020年03月
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System-Based Differential Gene Network Analysis for Characterizing a Sample-Specific Subnetwork.
Tanaka Y, Tamada Y, Ikeguchi M, Yamashita F, Okuno Y
Biomolecules 10 ( 2 ) 2020年02月
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Memory efficient parallel algorithm for optimal DAG structure search using direct communication
Yoshinori Tamada
Journal of Parallel and Distributed Computing 119 27 - 35 2018年
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Oncogenic roles of TOPK and MELK, and effective growth suppression by small molecular inhibitors in kidney cancer cells.
Kato T, Inoue H, Imoto S, Tamada Y, Miyamoto T, Matsuo Y, Nakamura Y, Park JH
Oncotarget 7 ( 14 ) 17652 - 64 2016年04月
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The hnRNP-Htt axis regulates necrotic cell death induced by transcriptional repression through impaired RNA splicing
Y. Mao, T. Tamura, Y. Yuki, D. Abe, Y. Tamada, S. Imoto, H. Tanaka, H. Homma, K. Tagawa, S. Miyano, H. Okazawa
CELL DEATH & DISEASE 7 e2207 2016年04月
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Efficient parallel algorithm for optimal DAG structure search on parallel computer with torus network
Honda, H., Tamada, Y., Suda, R.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 10048 LNCS 2016年
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Elevated β-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs.
Nakata A, Yoshida R, Yamaguchi R, Yamauchi M, Tamada Y, Fujita A, Shimamura T, Imoto S, Higuchi T, Nomura M, Kimura T, Nokihara H, Higashiyama M, Kondoh K, Nishihara H, Tojo A, Yano S, Miyano S, Gotoh N
Scientific reports 5 ( 1 ) 13076 2015年08月
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Lung adenocarcinoma subtypes definable by lung development-related miRNA expression profiles in association with clinicopathologic features.
Arima C, Kajino T, Tamada Y, Imoto S, Shimada Y, Nakatochi M, Suzuki M, Isomura H, Yatabe Y, Yamaguchi T, Yanagisawa K, Miyano S, Takahashi T
Carcinogenesis 35 ( 10 ) 2224 - 2231 2014年06月
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Vasohibin-1 is identified as a master-regulator of endothelial cell apoptosis using gene network analysis.
Affara M, Sanders D, Araki H, Tamada Y, Dunmore BJ, Humphreys S, Imoto S, Savoie C, Miyano S, Kuhara S, Jeffries D, Print C, Charnock-Jones DS
BMC genomics 14 ( 1 ) 23 - 23 2013年
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Cell cycle gene networks are associated with melanoma prognosis.
Wang L, Hurley DG, Watkins W, Araki H, Tamada Y, Muthukaruppan A, Ranjard L, Derkac E, Imoto S, Miyano S, Crampin EJ, Print CG
PloS one 7 ( 4 ) e34247 2012年04月
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Computational gene network analysis reveals TNF-induced angiogenesis.
Ogami K, Yamaguchi R, Imoto S, Tamada Y, Araki H, Print C, Miyano S
BMC systems biology 6 ( Suppl 2 ) S12 2012年
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Gene network inference and visualization tools for biologists: application to new human transcriptome datasets.
Hurley D, Araki H, Tamada Y, Dunmore B, Sanders D, Humphreys S, Affara M, Imoto S, Yasuda K, Tomiyasu Y, Tashiro K, Savoie C, Cho V, Smith S, Kuhara S, Miyano S, Charnock-Jones DS, Crampin EJ, Print CG
Nucleic acids research 40 ( 6 ) 2377 - 2398 2011年11月
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Estimating genome-wide gene networks using nonparametric Bayesian network models on massively parallel computers.
Tamada Y, Imoto S, Araki H, Nagasaki M, Print C, Charnock-Jones DS, Miyano S
IEEE/ACM transactions on computational biology and bioinformatics 8 ( 3 ) 683 - 697 2011年05月
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SiGN-SSM: open source parallel software for estimating gene networks with state space models.
Tamada Y, Yamaguchi R, Imoto S, Hirose O, Yoshida R, Nagasaki M, Miyano S
Bioinformatics (Oxford, England) 27 ( 8 ) 1172 - 3 2011年
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Searching optimal Bayesian network structure on constraint search space: Super-structure approach
Imoto, S., Kojima, K., Perrier, E., Tamada, Y., Miyano, S.
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 6797 LNAI 2011年
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Parallel algorithm for learning optimal bayesian network structure
Tamada, Y., Imoto, S., Miyano, S.
Journal of Machine Learning Research 12 2011年
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Collocation-based sparse estimation for constructing dynamic gene networks.
Shimamura T, Imoto S, Nagasaki M, Yamauchi M, Yamaguchi R, Fujita A, Tamada Y, Gotoh N, Miyano S
Genome informatics. International Conference on Genome Informatics 24 164 - 78 2010年
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Analysis of PPARalpha-dependent and PPARalpha-independent transcript regulation following fenofibrate treatment of human endothelial cells.
Araki H, Tamada Y, Imoto S, Dunmore B, Sanders D, Humphrey S, Nagasaki M, Doi A, Nakanishi Y, Yasuda K, Tomiyasu Y, Tashiro K, Print C, Charnock-Jones DS, Kuhara S, Miyano S
Angiogenesis 12 ( 3 ) 221 - 229 2009年04月