Affiliation
Graduate School of Science and Technology Research Division
External link
Fujimoto Kenji
Degree
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Doctor of Information Science
Education
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Osaka University Graduate School of Information Science and Technology Department of Bioinformatic Engineering
2019.04 ～ 2023.03
Country： Japan
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Osaka University School of Engineering Science Department of Information and Computer Sciences
2016.04 ～ 2019.03
Country： Japan
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Nara National College of Technology Department of Information Engineering
2011.04 ～ 2016.03
Country： Japan
Campus Career
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Hirosaki University Graduate School of Science and Technology Research Division Assistant Professor
2025.04 ～ Now
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Hirosaki University Graduate School of Medicine Department of Healthy Life Expectancy Extension Science Specially Appointed Assistant Professor
2023.04 ～ 202503
Research History
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Hirosaki University Graduate School of Science and Technology Assistant Professor
2025.04 ～ Now
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Hirosaki University Graduate School of Medicine Specially Appointed Assistant Professor
2023.04 ～ 2025.03
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Japan Society for the Promotion of Science Research Fellowship for Young Scientists
2021.04 ～ 2023.03
Research Interests
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cell tracking
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health informatics
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bio-image informatics
Research Areas
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Informatics / Life, health and medical informatics
Professional Memberships
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日本バイオインフォマティクス学会
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情報処理学会
Papers
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Reinforcement Learning-based Cell Tracking Method via Video Simulator
Toru Nagamura, Shigeto Seno, Kenji Fujimoto, Hironori Shigeta, Hideo Matsuda
IPSJ Transactions on Mathematical Modeling and Its Applications (TOM) 16 ( 2 ) 11 - 22 2023.10
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A Cell Tracking Method for Dynamic Analysis of Immune Cells Based on Deep Learning
Aya Watanabe, Kenji Fujimoto, Hironori Shigeta, Shigeto Seno, Yutaka Uchida, Masaru Ishii, Hideo Matsuda
International Journal of Machine Learning 13 ( 2 ) 64 - 69 2023.4
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A CNN-based Cell Tracking Method for Multi-Slice Intravital Imaging Data
Kenji Fujimoto, Tsubasa Mizugaki, Utkrisht Rajkumar, Hironori Shigeta, Shigeto Seno, Yutaka Uchida, Masaru Ishii, Vineet Bafna, Hideo Matsuda
Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics 2021.8
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Tracking and Analysis of FUCCI-Labeled Cells Based on Particle Filters and Time-to-Event Analysis
Kenji Fujimoto, Shigeto Seno, Hironori Shigeta, Tomohiro Mashita, Masaru Ishii, Hideo Matsuda
International Journal of Bioscience, Biochemistry and Bioinformatics 10 ( 2 ) 94 - 109 2020.4
Review Papers
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INGOR - Biological network estimation software
Yoshinori Tamada, Mai Nakazawa, Kenji Fujimoto, Kotaro Harada, Minoru Sakuragi, Yohei Harada, Yasushi Okuno
1st Asia & Pacific Bioinformatics Joint Conference (APBJC 2024) 2024.10
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Overlap-Aware Cell Tracker for Fluorescence Live-Cell Microscopy
Kenji Fujimoto, Shigeto Seno, Hironori Shigeta, Yutaka Uchida, Masaru Ishii, Yoshinori Tamada, Hideo Matsuda
1st Asia & Pacific Bioinformatics Joint Conference (APBJC 2024) 2024.10
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弘前市いきいき健診コホートにおける心理社会的アウトカムと健康度の関係性
沢田かほり, 三上達也, 石田水里, 岩根拓朗, 植村望, 横山慎太朗, 田中吏, 藤本健二, 橋本泰裕, 村下公一, 玉田嘉紀, 伊東健, 中路重之
日本社会精神医学会プログラム・抄録集 42 2024.8
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Overlap-Aware Cell Tracker for Time-Lapse Fluorescence Microscopy
Kenji Fujimoto, Shigeto Seno, Hironori Shigeta, Yutaka Uchida, Masaru Ishii, Yoshinori Tamada, Hideo Matsuda
The 27th Meeting on Image Recognition and Understanding (MIRU2024) 2024.8
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Cell tracking through video frame interpolation for live cell imaging
2023.9
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INGOR / SiGN-BN - Gene Network Estimation Software
2023.9
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ポストコロナ時代における健診のデジタル化の検討
岩根 拓朗, 沢田 かほり, 藤本 健二, 肥後 学, 三上 達也, 村下 公一, 玉田 嘉紀, 中路 重之
第31回体力・栄養・免疫学会大会 2023.8
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動画像シミュレータと強化学習による細胞追跡手法
長村 徹, 瀬尾 茂人, 藤本 健二, 繁田 浩功, 松田 秀雄
定量生物学の会第十回年会 2022.12
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細胞動画像シミュレータを介した強化学習による細胞追跡手法
長村 徹, 瀬尾 茂人, 藤本 健二, 繁田 浩功, 松田 秀雄
第25回画像の認識・理解シンポジウム (MIRU2022) 2022.7
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炎症刺激に対する免疫細胞の動態解析のための深層学習に基づく細胞追跡手法
渡部 綾, ブライソン ジェームス, 藤本 健二, 繁田 浩功, 瀬尾 茂人, 松田 秀雄
情報処理学会 第137回数理モデル化と問題解決 (MPS) 研究発表会 2022.3
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A Method for Tracking Cell Migration in vivo based on Deep Learning with Target Detection
Tsubasa Mizugaki, Utkrisht Rajkumar, Kenji Fujimoto, Hironori Shigeta, Shigeto Seno, Yutaka Uchida, Masaru Ishii, Vineet Bafna, Hideo Matsuda
2020 28th International Conference on Intelligent Systems for Molecular Biology (ISMB) 2020.7
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Data Augmentation for Immune Cell Tracking using Random Walk Models and Generative Adversarial Networks
Kenji Fujimoto, Shigeto Seno, Hironori Shigeta, Tomohiro Mashita, Yutaka Uchida, Masaru Ishii, Hideo Matsuda
BioImage Informatics 2019 2019.10
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細胞画像の領域分割のための敵対的生成ネットワークを用いた訓練データ生成手法
藤本 健二, 瀬尾 茂人, 渡邊 誓旅, 繁田 浩功, 間下 以大, 松田 秀雄
第22回画像の認識・理解シンポジウム (MIRU2019) 2019.8
Awards
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IPSJ Outstanding Paper Award
2025.03