Affiliation
Graduate School of Science and Technology Research Division
TANEDA AKITO
Degree
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博士（工学）
Research Interests
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Optimization problem
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Nano materials
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Metal cluster
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Genome information analysis
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Computer simulation
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Bioinformatics
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ゲノム情報解析
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ナノマテリアル
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バイオインフォマティクス
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最適化問題
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計算機シミュレーション
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金属クラスター
Research Areas
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Natural Science / Mathematical physics and fundamental theory of condensed matter physics
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Informatics / Life, health and medical informatics
Professional Memberships
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情報処理学会
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日本RNA学会
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日本バイオインフォマティクス学会
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日本金属学会
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日本RNA学会
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日本バイオインフォマティクス学会
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日本金属学会
Papers
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Changes in relative expression levels of viroid-specific small RNAs and microRNAs in tomato plants infected with severe and mild symptom-inducing isolates of Potato spindle tuber viroid
Daiki Tsushima,Charith Raj Adkar-Purushothama,Akito Taneda,Teruo Sano
Journal of General Plant Pathology 81 49 - 62 2014.11
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Deep sequencing uncovers commonality in small RNA profiles between transgene-induced and naturally occurring RNA silencing of chalcone synthase-A gene in petunia.
Megumi Kasai, Hideo Matsumura, Kentaro Yoshida, Ryohei Terauchi, Akito Taneda, Akira Kanazawa
BMC genomics 14 63 - 63 2013.1
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Multi-objective genetic algorithm for pseudoknotted RNA sequence design.
Akito Taneda
Frontiers in genetics 3 36 - 36 2012.4
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Coincident sequence-specific RNA degradation of linked transgenes in the plant genome（共著）
Megumi Kasai, Maiko Koseki, Kazunori Goto, Chikara Masuta, Shiho Ishii, Roger P. Hellens, Akito Taneda & Akira Kanazawa
Plant Molecular Biology 78 ( 3 ) 259 - 273 2012.2
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Accumulation of Potato spindle tuber viroid-specific small RNAs is accompanied by
Ying Wang, Makoto Shibuya, Akito Taneda, Tasuku Kurauchi, Mineo Senda, Robert A. Owens, Teruo Sano
Virology 413 72 - 83 2011.2
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A web server for multi-objective pairwise RNA sequence alignment with an index for selecting accurate alignments
A. Taneda
IPSJ Transactions on Bioinformatics 4 2 - 8 2011.1
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MODENA: a multi-objective RNA inverse folding
A. Taneda
Advances and Applications in Bioinformatics and Chemistry 4 1 - 12 2010.12
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Characterization of a new apple dimple fruit viroid variant that causes yellow dimple fruit formation in ‘Fuji’ apple trees
Y.-H. He，S. Isono，Y. Kawaguchi-Ito，A Taneda，K. Kondo，A. Iijima，K. Tanaka，T. Sano
Journal of General Plant Pathology 76 324 - 330 2010.8
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Multi-objective pairwise RNA sequence alignment
A. Taneda
Bioinformatics 26 2383 - 2390 2010.8
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A small nucleolar RNA functions in rRNA processing in Caenorhabditis elegans
Y. Hokii，Y. Sasano，M. Sato，H. Sakamoto，K. Sakata，R. Shingai，A. Taneda，S. Oka，H. Himeno，A. Muto，T. Fujiwara，C. Ushida
Nucleic Acids Research 38 5909 - 5918 2010.5
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Endogenous short interfering RNAs of chalcone synthase genes associated with inhibition of seed coat pigmentation in soybean
T. Kurauchi，T. Matsumoto，A. Taneda，T. Sano，M. Senda
Breeding Science 59 419 - 426 2009.12
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An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast
Akito Taneda
BMC Bioinformatics 9 521 2008.12
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Pariwise genome comparison for finding functional RNAs with low sequence identity
A. Taneda
The Proceedings of the 2007 Annual Conference of the Japanese Society for Bioinformatics 2007.12
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RNA Base Pairing Probability Alignment by Genetic Algorithm
A. Taneda
17h International Conference on Genome Informatics (GIW 2006) Poster and Software Demonstrations 2006.12
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Twelve novel C. elegans RNA candidates isolated by two-dimensional polyacrylamide gel electrophoresis
Y Hokii, A Kubo, T Ogasawara, Y Nogi, A Taneda, R Arai, A Muto, C Ushida
Gene 2006.1
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Prediction of Pseudoknotted RNA Structure by a Structural Alignment Using Genetic Algorithm
A. Taneda
16th International Conference on Genome Informatics (GIW 2005) Poster and Software Demonstrations 2005.12
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Cofolga: a genetic algorithm for finding the common folding of two RNAs
A. Taneda
Computational Biology and Chemistry 2005.4
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A genetic algorithm approach for finding the common structure of two homologous RNAs
A. Taneda
15th International Conference on Genome Informatics (GIW2004) Poster and Software Demonstrations 2004.12
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Adplot: detection and visualization of repetitive patterns in complete genomes
A. Taneda
Bioinformatics 2004.3
Awards
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日本遺伝学会第84回大会 Best Paper賞
2013.01